Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq11950 109 5e-19 seq271769 82.4 6e-11 >seq11950 Length=2906 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || || || |||| || | ||| ||||||||||||||||||||||| | Sbjct 889 TTCCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGG 830 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | ||||||| ||||| ||||| || |||| || | |||||| || || Sbjct 829 ACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGG 770 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| ||||| || || | | | || || || ||| Sbjct 769 GAATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAA 710 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | || |||||||| || || | || |||||||| ||||||||| Sbjct 709 CTTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 660 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | || || | ||||||||||||||| ||||||||||| ||||||| Sbjct 1117 TTCCACCTCTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCG 1058 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || |||| || | ||||| || || ||||| || | || | | ||||||||| || Sbjct 1057 ACAAGGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGG 998 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||||| ||||| | | | || || ||||| Sbjct 997 GAATTCCTTCCTTGTCTTGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAA 938 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | || |||||||| ||||| | ||||| ||||| || |||||| Sbjct 937 CCTCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCATT 888 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| ||||| ||||| || || | ||| | || || ||||||||||| ||||| || | Sbjct 661 TTCCACCTCGGAGCCTAAGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAG 602 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | ||||||| ||||| ||||| || |||| || | |||||| || || Sbjct 601 ACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGG 542 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| ||||| || || | | | || || || ||| Sbjct 541 GAATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAA 482 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | || || || ||||| |||| || ||||| || ||||||||| Sbjct 481 CCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 432 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| ||||| ||||| || || | ||| | || || ||||| ||||| || ||||| | Sbjct 205 TTCCACCTCGAAGCCTAAGGACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGG 146 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || | | || ||||| ||||| || ||| | ||||| | ||||||||| || Sbjct 145 AAAGAGTACGACCATCTTCCAGTTGTTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGG 86 Query 21067 GCACGCCTTCCTTGTCGGCGATCTT 21091 | | ||||||||||| |||||| Sbjct 85 GGATTCCTTCCTTGTCTTGGATCTT 61 >seq271769 Length=1390 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||| | ||||| | | ||||| ||||| ||||| || | | Sbjct 850 CCTTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGA 791 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | | | |||||| || ||| | |||||||| || |||||| ||||| | Sbjct 790 TCAAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTCT 731 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 ||| ||||| ||||||| || | ||| ||||||||||| || | || ||||| | Sbjct 730 CGATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 671 Query 21166 ATATTTGCAT 21175 | |||||||| Sbjct 670 AGATTTGCAT 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420773900097056