Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq11950 89.7 4e-13 >seq11950 Length=2906 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| |||| || | || |||||||| || || || || || | Sbjct 204 AATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTC 263 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | ||||| || || ||||||||||| | ||| |||||| Sbjct 264 AGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCCCCAGATCA 323 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | || |||||||| || || ||| | |||||| | ||| | |||||||||| Sbjct 324 ACAGCGTCTCATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACTCTCTCCGATTACAA 383 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 |||||||||||||| || ||||| Sbjct 384 CATTCAAAAGGAATCCACCCTTCA 407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409351819175024