Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq28030 280 2e-70 seq271769 113 5e-20 seq11950 111 2e-19 >seq28030 Length=5412 Score = 280 bits (310), Expect = 2e-70 Identities = 569/835 (68%), Gaps = 11/835 (1%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||||| | || || || | | ||||| |||||||| ||||| ||| ||||||| Sbjct 2142 GAGAACCCACAACGCTTTGTCGTCCTTCCCATCCAATACCCAGACATCTGGAACATGTAC 2083 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 ||||| |||| || |||||||| ||||| |||||||| || |||||| || Sbjct 2082 AAAAAAGCCGTTGCCAGCTTCTGGACGGTCGAAGAGGTGGATCTCAGCAAGGATACCCTA 2023 Query 116711 GACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 || ||||| ||| |||| ||| | ||||| ||||||| || || || |||||| Sbjct 2022 GATTGGGAAGAGCGTCTGAATGACGAAGAGCGTTATTTCATATCTCATGTCCTTGCCTTT 1963 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||| || ||||| ||||| || ||||| | |||||||||||| | ||||| Sbjct 1962 TTCGCTGCATCTGACGGAATCGTTAATGAGAACATCGTCGAGCGTTTCACCGCTGAGGTC 1903 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 || || | || ||||| |||||||| ||||||||| ||||||| || ||| | ||||| Sbjct 1902 CAAGTTACTGAAGCGCGATGCTTCTATGGCTTTCAGGTCGCCATCGAAAACATTCACTCT 1843 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTG 116947 |||||||| || ||||| ||||| || | | ||||| ||| || | Sbjct 1842 GAAATGTACTCATTACTCATTGACACCTATATCAAGGATAAAGAGGAAAAGGGTCGCCTC 1783 Query 116948 TTGAACGCCATCGAGACGATGCCGTGC--GTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 || |||||| | || | | || ||| ||||| ||||||| | ||||| | | Sbjct 1782 TTTAACGCCCTGGACA-ACTTCCCTGCTATTCAAA-AGAAGGCTGCTTGGGCTCAAAAGT 1725 Query 117006 GGATCGCCGGC-AGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||| ||| | | | || |||| || ||||| | | || || |||||||| || Sbjct 1724 GGA-CGCAGTCTACCTCTGCTTCCTTTGGAGAGCGAATCATAGCTTTTGCGGCCGTGGAA 1666 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || | ||||| || || || || |||| || ||||| ||||| || || |||||| Sbjct 1665 GGGATTTTCTTCTCCGGGTCCTTTGCTTCCATTTTCTGGCTGAAGAAGCGTGGACTCATG 1606 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184 || || || || ||| ||||| ||||| || | ||||| || || || |||||| Sbjct 1605 CCTGGGCTCACGTTCTCTAACGAACTCATTTCTCGTGACGAAGGGCTTCACACAGACTTT 1546 Query 117185 GCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATC 117244 ||||| | |||||| ||| | | | || | || ||| ||| ||| ||| Sbjct 1545 GCCTGCCTCATGTTCAGACATCTCGCTAATAAGCCCTCTGTGGAGCGGATCACGGAAATC 1486 Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGCGCTGCCGGTGCGTCT 117303 || || || || || |||||| |||| |||||||| || || || || ||||| | Sbjct 1485 GTTCGAGATGCCGTTGCGATCGAG-AGCGAGTTCCTCACAGAGGCTCTTCCCGTGCGAAT 1427 Query 117304 GCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCT 117363 ||| ||| | ||||| || | ||| ||| |||||| | || ||||| || | || || Sbjct 1426 GCTCGGAATGAATTGTGATTCCATGGTGCAGTACATCAAATTTGTCGCGGATCGACTCCT 1367 Query 117364 GCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATG 117418 | ||||| | | || ||||| |||||| | ||||| | ||||||||| Sbjct 1366 TGTAGAGCTTGACTGCCCCAAGATCTACAATAATGAAAACCCCTTTGACTTTATG 1312 >seq271769 Length=1390 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||||||||| ||||||||| | || || || || || Sbjct 661 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGCCCTCC 720 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || || | || || || || || ||| | || || Sbjct 721 GATACCATCGAGAACG-TGAAGACCAAGATCCAGGATAAGGAAGGAATTCCCCCAGATCA 779 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| ||||| || || | || |||||| ||||||||| Sbjct 780 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGACGGACCCTCTCCGACTACAA 839 Query 40869 CATCCAGAAGG 40879 ||||||||||| Sbjct 840 CATCCAGAAGG 850 >seq11950 Length=2906 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA- 40747 |||||| || ||||| || || ||||| ||||||||||| || | || || | ||||| Sbjct 1116 AATGCAGATTTTCGTCAAGACCCTCACTGGCAAAACCATTACTCTTGAGGTTG-AGCCAT 1174 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | |||| | ||| ||||| || || | |||||||| || || ||| | || | Sbjct 1175 CTGACACTATTGAAAATGTCAAGACCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATC 1234 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||| || || || || || || | ||||||||| |||||||| Sbjct 1235 AGCAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACCCTCTCCGACTACA 1294 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 1295 ACATCCAGAAGGAATCCACCCTTCA 1319 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA- 40747 |||||| || || || ||||| || || || || |||||||| | || || || |||| Sbjct 888 AATGCAGATCTTTGTTAAAACTCTTACCGGGAAGACCATCACTCTTGAGGTTGA-GCCAT 946 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||||| | | ||| | ||| || |||| ||||| || || || ||| | |||| Sbjct 947 CCGACACCATTGAAAATGTGAAGACTAAGATTCAAGACAAGGAAGGAATTCCCCCAGACC 1006 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||| ||||| || || || || | || ||| | ||||||| Sbjct 1007 AGCAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACCTTGTCGGACTACA 1066 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| || || ||| |||| ||||| |||| Sbjct 1067 ACATTCAAAAAGAGTCCACTTTGCATTTAGT 1097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513360443692160