Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq61270 134 1e-26 seq287714 96.9 2e-15 >seq61270 Length=8000 Score = 134 bits (148), Expect = 1e-26 Identities = 296/438 (68%), Gaps = 8/438 (2%) Strand=Plus/Minus Query 97027 CGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAA 97086 ||| | | |||||| || |||| || ||| || ||| | || ||||| || | Sbjct 7623 CGCTTCAACTGCTCCTCCAGGGCATTAACGTGGTTATTATAGACATGGGCATCCCCCAGG 7564 Query 97087 GTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGA 97146 | || ||||| || || || | | | || |||||||| ||||| |||| || Sbjct 7563 GAATGTATAAAGTCCCCTGGCTTAAGACCCGTCACATGGGCCATCATGATGGTTAGAAGG 7504 Query 97147 GAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAAC 97206 | |||||| ||||||||||| || || || || ||||||||||| || | ||||| | Sbjct 7503 GCATAGCTGGCAATGTTAAATGGTACACCAAGACCCATATCAGCAGAGCGCTGATACATT 7444 Query 97207 TGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACA-TGACAGGGGGGCAA 97265 || || ||||||| || | |||||| ||||| ||| ||| || || || ||||| Sbjct 7443 TGGCAAGAAAGCTCCCCGTTCGCCACATAGAACTG-TACAAGACAGTGGCACGGAGGCAA 7385 Query 97266 CGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGG 97325 |||||| ||| |||| | |||||||||||||||| ||| | | |||| || Sbjct 7384 GGCCATTAAATGAAGATCTCTCGCGTTCCAAGCACACATCACCATACGACGATCGTCCGG 7325 Query 97326 GTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAAT- 97384 || | | ||||| | ||| | || | | ||||| || || | ||| | || | Sbjct 7324 ATTACTCTTAATGGTCTCAATAACCTTCCCAAGCTGATCCACACCCTTCCCAGCGTAGTC 7265 Query 97385 TG--TGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGG 97442 || ||| | | | ||| || || ||||| ||||||||||| || ||||| || || Sbjct 7264 TGCATGCATGGTA---TCATACTCCGCGCCAAAGTGCCTCCATTGAAACCCATAGACCGG 7208 Query 97443 TCCAAGGTCTCCTTCTTC 97460 || | ||||||||||| Sbjct 7207 CCCTAAATCTCCTTCTTC 7190 >seq287714 Length=1605 Score = 96.9 bits (106), Expect = 2e-15 Identities = 167/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 97033 AGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGA 97092 ||||||||| || |||| |||||| |||||| |||||||| || || || ||| Sbjct 1360 AGCTGCTCTTTGGCTTGTTCAAAGTGATTATGATAAATATGAGCATCGCCAAACGTATGA 1301 Query 97093 ATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATA-GAGAATA 97151 | ||| || || |||||||| || || || | ||| || | ||| | | | ||| Sbjct 1300 ACAAAATCGCCTACTTCTAAATCACAAACTTGCGCTAACAT-CATGGTAAGAAGCGCATA 1242 Query 97152 GCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACA 97211 ||||| ||||| ||||| |||| ||||| || || | ||| || | ||||| Sbjct 1241 AGAGGCAATATTAAACGGCACACCTAAGAAGATATCCGCAGAACGTTGGTAAAGTTGACA 1182 Query 97212 GGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 || | ||||||||| ||||||||||||| || |||||| || ||||| ||||| Sbjct 1181 AGACAACTTTCCATCCGCCACATAAAACTGAAACATCGTATGACAAGGCGGCAAGGCCAT 1122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345564184679120