Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq137513 127 3e-24 seq11950 98.7 1e-15 >seq137513 Length=5763 Score = 127 bits (140), Expect = 3e-24 Identities = 284/431 (66%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 202763 TCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTT 202822 ||||| || || |||| || ||||| ||||||||| ||| || ||||| || ||| Sbjct 2112 TCAAACTTCCGCTTACAACCATCATAGGTCATATATCGAATCTTCCCAAAAATATCCCTT 2171 Query 202823 TCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCATTT 202882 || |||||| | |||||||| |||||||| |||||||| |||||| | ||||| Sbjct 2172 TCCTTCCATCCCTGATCATGAACCCCACAAATGGACCACATGACCCCAACAAACCCATTG 2231 Query 202883 GGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCTTCT 202942 | |||| ||||||| ||| | |||||| ||| | || Sbjct 2232 GCATCATTGCCATCTAGGGCATAGTGATCATTCAAAAAGAGAGCATCCCTCAGGGCACGC 2291 Query 202943 TCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCATGC 203002 || || | ||||| || ||||| ||||||||||||||||||| | | | |||||| Sbjct 2292 TCAGGACTATCCGTCCACTCCAATATCTTTTTAGCCCAATACATTCGCATAAACCCATGC 2351 Query 203003 ATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGTTAAT 203062 ||||| || | | | ||| | |||| |||||||| | || ||||| || Sbjct 2352 ATTTTCCCCTCCGACACAAGTTGAATCTGTGCGGCATTCCAGAGATCATCATGGGTCTTG 2411 Query 203063 GCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCATTTTTATGTTCATTT 203122 || | |||| | | | |||| | ||| |||| | ||| |||||||| || || Sbjct 2412 CCACTCGCAAGCTTCTCTCTGGTATACACATGCTTTCGCGGATCCTTTTTATGATCCTTC 2471 Query 203123 AGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTCATTATAATAA 203182 || | || ||||| | || || ||| | | |||| || | |||||||| || Sbjct 2472 AGGGACTTCCGAGCCCAGTCATGGGCTCCAAGGAGACTATCATAGTGCTCATTATAGTAG 2531 Query 203183 CAAAAATTATC 203193 ||||||||||| Sbjct 2532 CAAAAATTATC 2542 >seq11950 Length=2906 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| ||||| |||||||| || || ||||| |||| || Sbjct 432 AATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTC 491 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || |||||||| || || || || || || ||||| Sbjct 492 AGACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCA 551 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || ||||| || || || || ||||||| |||| || | |||||||| Sbjct 552 GCAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCTGATTATAA 611 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||| ||||| || | ||| | || | | | |||||||| || ||| || Sbjct 612 TATTCAAAAGGAATCTACCCTTCATCTTGTCCTTAGGCTCCGAGGTGGAATGCAAATTT 670 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| ||||| |||||||| || || ||||| |||| || Sbjct 204 AATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTC 263 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || || || ||||||||||| || || || ||||| Sbjct 264 AGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCCCCAGATCA 323 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || ||||| ||||| ||| | || ||| | || || | ||||| || Sbjct 324 ACAGCGTCTCATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACTCTCTCCGATTACAA 383 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||||| ||||| || | ||| | ||| Sbjct 384 CATTCAAAAGGAATCCACCCTTCATCTCGTT 414 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || || || || || || || ||| | ||| |||| || Sbjct 888 AATGCAGATCTTTGTTAAAACTCTTACCGGGAAGACCATCACTCTTGAGGTTGAGCCATC 947 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || || |||||||| || ||||| || || || || || Sbjct 948 CGACACCATTGAAAATGTGAAGACTAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCA 1007 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | || || || || || ||| | |||||| | ||||| || || || || Sbjct 1008 GCAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACCTTGTCGGACTACAA 1067 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||||||||| ||| | ||| | ||||||| || Sbjct 1068 CATTCAAAAAGAGTCCACTTTGCATTTAGTTCTTCGTCTCAGAGGTGGAAT 1118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752730541388800