Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq11950 134 1e-26 seq78081 122 8e-23 >seq11950 Length=2906 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | ||||||| |||||||| | |||||||| ||||||||||| || ||| | Sbjct 887 CCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGAC 828 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || |||||| | ||||||||||||||||| || || Sbjct 827 AGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 768 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||||||| ||| || || || | || | |||||| | | ||| || Sbjct 767 ATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACT 708 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || || || || || |||||||| ||||| Sbjct 707 TCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCAT 661 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || |||||||| || ||||| || ||||| ||||| ||||| || ||| Sbjct 629 GTAGATTCCTTTTGAATATTATAATCAGACAGGGTGCGACCGTCCTCTAGCTGCTTGCCA 570 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | ||||||||||||||||| || || || |||||||||||| ||| || || Sbjct 569 GCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTG 510 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | | ||| ||||| | || | |||||||| || ||||| Sbjct 509 ACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTC 450 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 449 TTGACGAAGATTTGCAT 433 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||||||||||||||| || || || || |||||| || || || ||| Sbjct 1085 GTGGACTCTTTTTGAATGTTGTAGTCCGACAAGGTTCGGCCATCCTCAAGTTGCTTGCCA 1026 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||||||||| || || || || || ||||||||| ||| || || Sbjct 1025 GCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGAATCTTAGTCTTC 966 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | |||||| | ||| ||||| | || | || || ||||| |||||| Sbjct 965 ACATTTTCAATGGTGTCGGATGGCTCAACCTCAAGAGTGATGGTCTTCCCGGTAAGAGTT 906 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 905 TTAACAAAGATCTGCAT 889 Score = 100 bits (110), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || || || |||||||| ||| | ||||| ||||||| Sbjct 1325 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCG 1266 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGT 118648 || || ||||| ||| |||| | |||||||||||| || || || || || ||||| || Sbjct 1265 AGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGG 1206 Query 118649 AATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 | | || || || || | ||| | ||||| | ||| ||||| | || | |||| Sbjct 1205 A--TCTTGGTCTTGACATTTTCAATAGTGTCAGATGGCTCAACCTCAAGAGTAATGGTTT 1148 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || || || || ||||||||||| Sbjct 1147 TGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1117 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || |||||||||||||||||| | ||| || ||| || || || ||||| Sbjct 401 GTGGATTCCTTTTGAATGTTGTAATCGGAGAGAGTACGGCCATCTTCAAGTTGCTTTCCG 342 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||||||||| ||||| || || || || || || || || || || Sbjct 341 GCAAAGATGAGACGCTGTTGATCTGGGGGGATTCCTTCTTTATCCTGGATCTTGGCCTTG 282 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | | ||| ||||| | || | |||||||| || ||||| Sbjct 281 ACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTC 222 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 221 TTGACGAAGATTTGCAT 205 >seq78081 Length=4256 Score = 122 bits (134), Expect = 8e-23 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||||||||||||||| || | || || |||||||||||| ||||| || ||| Sbjct 2975 CTTTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGA 3034 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | |||||| ||||| ||||| || |||||||| ||| ||||| ||||| | || Sbjct 3035 TCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTT 3094 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| ||| || | | ||| ||||||| ||| | ||||| || || || || || || | Sbjct 3095 CGATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGA 3154 Query 118729 AAATCTGCAT 118738 |||||||||| Sbjct 3155 AAATCTGCAT 3164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432304398314272