Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq137513 129 1e-24 >seq137513 Length=5763 Score = 129 bits (142), Expect = 1e-24 Identities = 289/434 (67%), Gaps = 0/434 (0%) Strand=Plus/Minus Query 189299 TCGGATAATTTTTGTTACTATAACAAACATTATGATAGTATCCAGTCTACTCATTCATGG 189358 || ||||||||||| |||||||| | || ||||||||| ||| | ||| ||| Sbjct 2545 TCAGATAATTTTTGCTACTATAATGAGCACTATGATAGTCTCCTTGGAGCCCATGACTGG 2486 Query 189359 GCCAGAAAAACATTAGAAGATCACATTAATGATCCTAGAAAGTATATATATTCCATTAAA 189418 || | || | | | ||||| | || ||||| ||||| || | ||| ||| | Sbjct 2485 GCTCGGAAGTCCCTGAAGGATCATAAAAAGGATCCGCGAAAGCATGTGTATACCAGAGAG 2426 Query 189419 CAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTG 189478 | || | | | | || |||||| ||| ||||| || |||| || || | ||| Sbjct 2425 AAGCTTGCGAGTGGCAAGACCCATGATGATCTCTGGAATGCCGCACAGATTCAACTTGTG 2366 Query 189479 AGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGG 189538 || || ||||||||| | ||| | ||||||||||||||||| |||||| | || ||| Sbjct 2365 TCGGAGGGGAAAATGCATGGGTTTATGCGAATGTATTGGGCTAAAAAGATATTGGAGTGG 2306 Query 189539 ACTAGAACACCTGAAGACGCTTTGAGTTATAGTATCTATTTGAACAACAAGTACGAACTA 189598 || | ||||| || |||| || | ||| |||||| | | || | ||| Sbjct 2305 ACGGATAGTCCTGAGCGTGCCCTGAGGGATGCTCTCTTTTTGAATGATCACTATGCCCTA 2246 Query 189599 GACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGAT 189658 || |||| ||| | || || | || || |||||||| ||||| || | || ||| Sbjct 2245 GATGGCAATGATGCCAATGGGTTTGTTGGGGTCATGTGGTCCATTTGTGGGGTTCATGAT 2186 Query 189659 AGAGCGTGGAAAGAAAGACCGATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCT 189718 | ||||| ||||| || ||||| ||||| ||||||||| ||||| ||| | Sbjct 2185 CAGGGATGGAAGGAAAGGGATATTTTTGGGAAGATTCGATATATGACCTATGATGGTTGT 2126 Query 189719 AAGAAGAAATTTGA 189732 ||| ||| ||||| Sbjct 2125 AAGCGGAAGTTTGA 2112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919866182904640