Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq11950 125 8e-24 seq11106 100 3e-16 seq1105 100 3e-16 seq271769 82.4 9e-11 >seq11950 Length=2906 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||||||||| ||||||| ||| || || |||| ||||||||||| |||||||| Sbjct 623 TCCTTTTGAATATTATAATCAGACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAA 564 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 ||||| |||||||| || | || | | |||||||| | ||| | || | |||| | Sbjct 563 ATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGT-CTTGAATCTTAGCCTTGACGTT 505 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| | || || || | ||||| |||||||| ||||| ||||| || Sbjct 504 CTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGAC 445 Query 43172 AAAGATTTGCATT 43184 |||||||||||| Sbjct 444 GAAGATTTGCATT 432 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| || | || ||||| || | || |||||||||||| || || || | Sbjct 888 TCCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGA 829 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || || |||| ||||||||||| |||||||| ||||| |||||||| || | || Sbjct 828 CAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGG 769 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | |||||||| | ||| | || | |||| || | | ||||| | || | Sbjct 768 AATTCCCTCCTTGT-CTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAA 710 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | |||||||| || || || || ||||| ||||| ||||||||| Sbjct 709 CTTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 660 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| | ||| | || |||||||| ||| ||| |||||||| ||||| || | Sbjct 1116 TCCACCTCTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGA 1057 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || || ||||| |||||||| || | ||||||||||| | || Sbjct 1056 CAAGGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 997 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||||||| | ||| | || || || | | | | |||||| | || | Sbjct 996 AATTCCTTCCTTGT-CTTGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAA 938 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | |||||||| || || || || || || |||||||| |||||| Sbjct 937 CCTCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCATT 888 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| |||||||| | ||||| || | || || || ||||| || || || Sbjct 395 TCCTTTTGAATGTTGTAATCGGAGAGAGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAG 336 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||| || || | || | | || || ||| ||| || |||| || Sbjct 335 ATGAGACGCTGTTGATCTGGGGGGATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTC 276 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| | || || || | ||||| |||||||| ||||| ||||| || Sbjct 275 TCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACG 216 Query 43173 AAGATTTGCATT 43184 |||||||||||| Sbjct 215 AAGATTTGCATT 204 >seq11106 Length=1565 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| || |||||||||||||||||| ||||||||||||| Sbjct 370 CTCCCCGACGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTCACCACTA 311 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 310 TACTATCGAGGATTG 296 >seq1105 Length=552 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| || |||||||||||||||||| ||||||||||||| Sbjct 214 CTCCCCGACGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTCACCACTA 273 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 274 TACTATCGAGGATTG 288 >seq271769 Length=1390 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || ||||| | || || |||||||| |||||||| | Sbjct 850 CCTTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGA 791 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||| || | || | | ||||| ||| ||| || || | || Sbjct 790 TCAAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTCT 731 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | || ||| | ||||| || | |||||||| |||||||| || ||||| || | Sbjct 730 CGATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 671 Query 43174 AGATTTGCAT 43183 |||||||||| Sbjct 670 AGATTTGCAT 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569754653644480