Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq28030 152 5e-32 seq285389 118 1e-21 >seq28030 Length=5412 Score = 152 bits (168), Expect = 5e-32 Identities = 555/860 (65%), Gaps = 19/860 (2%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||||||||| | ||| |||| |||||||| ||||| ||||| || | ||||||||| Sbjct 1250 TTTTGATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTT 1309 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 |||||||| ||||| || |||| | ||| || ||| | | || | | Sbjct 1310 TCCATAAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCAGTCAAGCTCTACAAGG 1369 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 | || |||||| ||||||| || ||||| ||| ||||||| |||||||| | | | Sbjct 1370 AGTCGATCCGCGACAAATTTGATGTACTGCACCATGGAATCACAATTCATTCCGAGCATT 1429 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTC---AATGATT 16180 || || | || ||||| | || | | || || ||| || || || |||| Sbjct 1430 CGCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACGATT 1489 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAATA---AG-TGTTTAAACATTATACA 16236 || | | | | | | || ||||| ||| || || ||| | ||||| | || Sbjct 1490 ---TC-CGTGATCCGC---TCCACAGAGGGCTTATTAGCGAGATGTCTGAACATGAGGCA 1542 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 ||||| || || | |||||||| | | || | ||||| || || || || || Sbjct 1543 GGCAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCC 1602 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 ||||| ||||| || || || | ||| || || | ||||| || || || ||||| || Sbjct 1603 AGGCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAAT 1662 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 ||||| || || ||||| || | | |||||| || | | | || | | Sbjct 1663 CCCTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCGT 1722 Query 16417 ccattttttagcccaatttgctttttgtttAACA-CAGTTCATGTTCTCTATTGCATTAA 16475 ||| |||| ||||||| || || | || || | ||| | ||| || | || |||| Sbjct 1723 CCACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAG-GGAAGTTGTCCAGGGCGTTAA 1781 Query 16476 ATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTT 16535 | | | ||||| | |||| ||||| || || || ||||| ||||||| Sbjct 1782 AGAGGCGACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAATGAGTAATGAGTACATTT 1841 Query 16536 CTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTT 16595 | || ||||| || || || || | |||||| ||||| ||||||| ||||| | | || Sbjct 1842 CAGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTCAGTAACTT 1901 Query 16596 GTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAA 16655 | || |||| | || | || | | ||| || ||||| ||||| || || || | Sbjct 1902 GGACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGATTCCGTCAGATGCAGCGA 1961 Query 16656 AAAACGCAAGTATGTG---TTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGT 16712 |||| ||||| | || | | | | || | ||||| || | | | | ||| | Sbjct 1962 AAAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCATTCAGACGCTCTTCCCAAT 2021 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 | ||| || | ||| |||||||| || ||||| || ||||| || |||| Sbjct 2022 CTAGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGCTGGCAACGGCTTTTT 2081 Query 16773 TATACATTTTCCATATGTCT 16792 | ||||| ||||| |||||| Sbjct 2082 TGTACATGTTCCAGATGTCT 2101 >seq285389 Length=790 Score = 118 bits (130), Expect = 1e-21 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| ||||| |||||||||||||||||||||||||| |||| | ||| || | Sbjct 587 TTTTTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAGTGATATCAT 646 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAAT--AGTATTTATCGCATCCCAATTCCAAC 16060 |||||||| ||||||||||| | |||| | | | ||| |||||| | || || | Sbjct 647 ATCCATAAAGTCAAAAGGATTAGT--AACATTGAATTCTTTTTCGCATTCTAACTCAACT 704 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 || | |||||| | || || |||| ||| ||| |||| | ||| | ||||| || ||| Sbjct 705 AAGAGTCTATCAGTTACGAACTCTAAATATTGTGTCATCAGATCTGAATTCATACCAATT 764 Query 16121 AATTTAACAGGGATTGCTTCTGTTAA 16146 || | || || | | ||||||||| Sbjct 765 AAACTTACCGGTAGAGATTCTGTTAA 790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460843395457600