Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq61270 129 5e-25 >seq61270 Length=8000 Score = 129 bits (142), Expect = 5e-25 Identities = 247/364 (68%), Gaps = 0/364 (0%) Strand=Plus/Plus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| || ||||| || || || ||||| ||||||||||| || ||||| || || |||| Sbjct 7191 AAGAAGGAGATTTAGGGCCGGTCTATGGGTTTCAATGGAGGCACTTTGGCGCGGAGTATG 7250 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 | |||| | || | || ||| | || || ||||| | || |||||| | Sbjct 7251 ATACCATGCATGCAGACTACGCTGGGAAGGGTGTGGATCAGCTTGGGAAGGTTATTGAGA 7310 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 ||||| | || || |||| | | || | | || || |||||||| | |||| Sbjct 7311 CCATTAAGAGTAATCCGGACGATCGTCGTATGGTGATGTGTGCTTGGAACGCGAGAGATC 7370 Query 20393 TGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATG 20452 | | ||||||||| |||||||| || || || || || || || || || | Sbjct 7371 TTCATTTAATGGCCTTGCCTCCGTGCCACTGTCTTGTACAGTTCTATGTGGCGAACGGGG 7430 Query 20453 AATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATA 20512 | | || || ||||||||||| || || ||||||||||| || ||||| || || || | Sbjct 7431 AGCTTTCTTGCCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTACCATTTAACA 7490 Query 20513 TTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTG 20572 |||| || ||||| || || || ||||| || ||||| || | | | || | || | Sbjct 7491 TTGCCAGCTATGCCCTTCTAACCATCATGATGGCCCATGTGACGGGTCTTAAGCCAGGGG 7550 Query 20573 ACTT 20576 |||| Sbjct 7551 ACTT 7554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397779867286120