Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq28030 170 2e-37 seq285389 111 2e-19 >seq28030 Length=5412 Score = 170 bits (188), Expect = 2e-37 Identities = 629/972 (65%), Gaps = 35/972 (4%) Strand=Plus/Plus Query 13837 TATA-ATATTCAATAAAAAC---TAAAAATCAACATCTAACGAAAAAACATTATCGTCTT 13892 |||| ||||| || | |||| || || || ||||||||| ||| ||| |||| Sbjct 1170 TATATATATTTAAAATAAACGTTTAGAAGTCGGCATCTAACGTAAAT---TTACGTTCTT 1226 Query 13893 TG---TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAG 13949 | || || || || || ||||||||||| | ||| | || ||||||||||| | Sbjct 1227 CGGGCTTTGACATCACACCGGCCTTTTGATATTCTCCCACTTTCTTCTCAAAGAAGTTTG 1286 Query 13950 TTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAA----AC 14005 | || || ||||| || |||||||||||||| ||||| || ||| ||| | | Sbjct 1287 TCTTTCCATCCAGGGAAATATTTTCCATAAAGTCAAAGGGGTTTT----CATTATTGTAG 1342 Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065 | || || | || |||| || | || |||||| | || | || || || | Sbjct 1343 ATCTTGGGGCAGTCAAGCTCTACAAGGAGTCGATCCGCGACAAATTTGATGTACTGCACC 1402 Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125 || ||||||||||||| || | | | || |||| | || | || || | Sbjct 1403 ATGGAATCACAATTCATTCCGAGCATTCGCACGGGAAGAGCCTCTGTGAGGAACTCGCTC 1462 Query 14126 TCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT 14185 || || | || || || | || ||| || || ||| || || Sbjct 1463 TCGATCGCAACGGCATCTCGAACGATTTCCGTGATCCGCTCCACAGAGGGCTTATTAGCG 1522 Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 |||||| | || || | || ||||| || ||||| || || || | | ||| ||| Sbjct 1523 AGATGTCTGAACATGAGGCAGGCAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGT 1582 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 ||||| || || || | || ||||| | ||| || || || | ||| || || | ||| Sbjct 1583 TCGTTAGAGAACGTGAGCCCAGGCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCA 1642 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365 || || ||||| ||||| || || || || || ||||| ||||| | ||| |||||||| Sbjct 1643 AAGGACCCGGAGAAGAAAATCCCTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAG 1702 Query 14366 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14425 || || | | |||| ||| |||||| ||| || |||| |||| | Sbjct 1703 GAAGCAGAGGTAGACTGCGTCCACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGG 1762 Query 14426 ATTGTTTCAATAGCATTAAATAAATGTTCCTT---CTCTTTAGTACTTGAAATGTATGTA 14482 | | || | || ||||| | | |||| ||||||| | ||||| || | || Sbjct 1763 AAGTTGTCCAGGGCGTTAAAGAGGCGACCCTTTTCCTCTTTA-TCCTTGATAT--AGGTG 1819 Query 14483 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAA 14542 ||||| ||||| |||||||||||||| |||||||| || || | |||||| ||||| Sbjct 1820 TCAATGAGTAATGAGTACATTTCAGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAG 1879 Query 14543 AAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTA 14602 || |||| ||||| | ||| ||||| | | || | ||| | | || |||||| Sbjct 1880 AAGCATCGCGCTTCAGTAACTTGGACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTA 1939 Query 14603 ACTATACCATCACTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTT 14660 || || || ||| || || ||||| || | | ||| | || || || |||||| Sbjct 1940 ACGATTCCGTCAGATGCAGCGAAAAAGGCAAGGACATGAGAT--ATGAAATAACGCTCTT 1997 Query 14661 CAT--TGCTGA-GTTTTTTCCAATC--GGCTAAATCCTTAGAAAGATCTACTTCATCAAC 14715 | | | | || | | || |||||| || | |||||| ||||| || || || || Sbjct 1998 CGTCATTCAGACGCTCTTCCCAATCTAGGGT--ATCCTTGCTGAGATCCACCTCTTCGAC 2055 Query 14716 TGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGG 14775 ||||| || || ||||| |||||||| ||||| ||| || ||| ||| || || Sbjct 2056 CGTCCAGAAGCTGGCAACGGCTTTTTTGTACATGTTCCAGATGTCTGGGTATTGGATGGG 2115 Query 14776 AAAAACTACAAA 14787 || || ||||| Sbjct 2116 AAGGACGACAAA 2127 >seq285389 Length=790 Score = 111 bits (122), Expect = 2e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 |||||| ||||| ||||| ||||||||||| || |||||||||| |||||||| | Sbjct 587 TTTTTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAGTGATATCAT 646 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 14030 |||||||| ||||| ||||| | | ||| | || |||| || || ||| || | || Sbjct 647 ATCCATAAAGTCAAAAGGATTAG-TAACATTGAATTCTTTTTCGCATTCTAACTCAACTA 705 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 | |||||| | | |||||| | |||||| | ||| | ||| |||||||||| |||| Sbjct 706 AGAGTCTATCAGTTACGAACTCTAAATATTGTGTCATCAGATCTGAATTCATACCAATTA 765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480605441778880