Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08]
288,616 sequences; 398,147,594 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq11950 84.2 2e-11
>seq11950
Length=2906
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| || || ||||| || | ||||| || ||||| |||||||||||||| ||||
Sbjct 432 TCCTCCACGAAGCCTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGA 373
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | |||||| | ||| || || ||| |||| || | |||||||| |||
Sbjct 372 GAGAGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGG 313
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||| ||||| || | |||||| | ||| ||||| || |||
Sbjct 312 GATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAAC 253
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| | ||||| ||||||| || | || || || || |||||||||
Sbjct 252 CTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 204
Score = 82.4 bits (90), Expect = 6e-11
Identities = 163/239 (68%), Gaps = 2/239 (1%)
Strand=Plus/Minus
Query 18089 TTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTT 18148
||||| | ||| || || || | || |||| |||||| || ||||| || || |||||
Sbjct 1353 TTTTTACTGTCCCCCACGAAGACGCAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTT 1294
Query 18149 GTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTG 18208
|||||||| | || || ||| || | ||| || || || |||| | | || ||
Sbjct 1293 GTAGTCGGAGAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTG 1234
Query 18209 ATCCACGGGCACGCCTTCCTTAT-CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCAC 18267
||| ||| | ||||| || | | | | ||| | |||||| | | ||| |||||||
Sbjct 1233 ATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGT-CTTGACATTTTCAATAGTGTCAG 1175
Query 18268 CGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||||| |||| || ||| ||||||| || | || || || ||||| ||||||
Sbjct 1174 ATGGCTCAACCTCAAGAGTAATGGTTTTGCCAGTGAGGGTCTTGACGAAAATCTGCATT 1116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 378009654634920
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |