Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq124498 145 7e-30 seq11950 123 2e-23 seq124497 93.3 4e-14 seq271769 86.0 6e-12 >seq124498 Length=1304 Score = 145 bits (160), Expect = 7e-30 Identities = 251/362 (69%), Gaps = 2/362 (1%) Strand=Plus/Minus Query 23064 TGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGT 23123 ||||||| |||||||| || ||||||||| || || || ||||| | || || | Sbjct 370 TGTACTCCACAATTTCCGTGCATAGATTGGAGCATTTAATGGTGCCTAGGTTCTGTTGAT 311 Query 23124 TGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCG 23183 || ||||| ||||| | ||||||||||||||| || ||||| |||||||||| |||| Sbjct 310 TGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATATAAGGCGTTCCCGTCTCGATTTGCG 251 Query 23184 ACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTT 23243 |||| ||||| || ||| || | ||||| | || ||||| || | ||||| Sbjct 250 ACTCAATGATGGCCTCCCAGATCTTTTGAGCCGGGACCTGTCGCCTATAATTCCCTTCCG 191 Query 23244 CCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCG 23303 |||| ||||| |||||| ||||| | | || | ||||| || | || || | Sbjct 190 CCTCATACTTCAAGTACAAGCTCTCAAAGGCCTCTCCCCAGCAGTCCGCTAATCCAGG-G 132 Query 23304 ATTGCAT-CGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGA 23362 | ||| ||| ||||| | ||||| | || | ||| || || |||| || ||| Sbjct 131 CTCTCATGCGGGCACATCAAGCTCCAAACGCCATCCTCTTCCACACGCTTCATGAAGAGA 72 Query 23363 TCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTC 23422 ||||| ||||| || |||||||||| || | ||| || ||||| || |||||| Sbjct 71 TCCGGGATCCAGAGGGCGTAGAACAAGTCCCTGGCCCGGTTTTCCTCGGCCCCCGTGTTC 12 Query 23423 TT 23424 || Sbjct 11 TT 10 >seq11950 Length=2906 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || |||||||| ||||| | || ||||| | || Sbjct 433 ATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTCA 492 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || |||||||| || | || || || ||| Sbjct 493 GACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 552 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || ||| | || || |||||||| Sbjct 553 CAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCTGATTATAAT 612 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| ||||| || |||||||| || ||||| || Sbjct 613 ATTCAAAAGGAATCTACCCTTCATCTTGTCCTTAGGCT 650 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || || || || ||||| | || ||||| | || Sbjct 661 ATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTCA 720 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || |||||||| || | || || || ||| Sbjct 721 GACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 780 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || ||| | || || ||| |||||| Sbjct 781 CAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCCGACTATAAC 840 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || || |||||||| |||| || ||| |||| || || Sbjct 841 ATTCAAAAGGAGTCTACTCTTCACTTGGTTCTGAGATTGAGAGGAGG 887 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || |||||||| ||||| | || ||||| | || Sbjct 205 ATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTCA 264 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||| || ||||| | || || || || Sbjct 265 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCCCCAGATCAA 324 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || || || || | ||||| ||| | |||||| ||| Sbjct 325 CAGCGTCTCATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACTCTCTCCGATTACAAC 384 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| ||||| || |||||||| || ||||| || Sbjct 385 ATTCAAAAGGAATCCACCCTTCATCTCGTTCTTAGGCT 422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 ||||||||||| | || || |||||||||||||| || || ||||| ||||| ||||| Sbjct 70 GACAAGGAAGGAATCCCCCCAGACCAGCAGCGTCTTATCTTTGCTGGAAAACAACTGGAA 129 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || | ||| | ||| || || ||||| || |||||||| |||||||| || ||| Sbjct 130 GATGGTCGTACTCTTTCCGACTACAATATTCAGAAGGAATCGACCCTTCATCTTGTCCTT 189 Query 31406 AGACT 31410 || || Sbjct 190 AGGCT 194 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || ||||| || || || || ||||| | || ||||| || ||| Sbjct 889 ATGCAGATCTTTGTTAAAACTCTTACCGGGAAGACCATCACTCTTGAGGTTGAGCCATCC 948 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || || || ||| | | |||||||||| | || || ||||| Sbjct 949 GACACCATTGAAAATGTGAAGACTAAGATTCAAG-ACAAGGAAGGAATTCCCCCAGACCA 1007 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || ||||||||||| || | || || || || || || || Sbjct 1008 GCAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACCTTGTCGGACTACAA 1067 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||||| || ||| | ||| | || ||| | || || || || Sbjct 1068 CATTCAAAAAGAGTCCACTTTGCATTTAGTTCTTCGTCTCAGAGGTGG 1115 >seq124497 Length=910 Score = 93.3 bits (102), Expect = 4e-14 Identities = 323/500 (65%), Gaps = 18/500 (4%) Strand=Plus/Minus Query 23513 ACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCG 23572 ||||| ||||| ||||||||||| || | || | || ||||| |||||||| ||| Sbjct 908 ACGTAGCGGGCTGTGTTGTTGTAGACGCGGAGAAGGGGAACGAGTCCGTTGGAGTATCCG 849 Query 23573 CCTACGCCCGCCACA---CTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATG 23629 |||| | | ||| || || || || | | || || | || || || Sbjct 848 TTGGTGCCCCCGATGTAGCTC---CCCTTGGCCCGGATGCAATGGACATTGATCCCGATC 792 Query 23630 CCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATG 23689 || || | | || || || || || ||| || || ||||||||||||||||||||| Sbjct 791 CCGCCAGCAAACTTGGAGATGATGGCCGTTTGCTTAAGCGTGTCGTAGATGCCCTCGATG 732 Query 23690 CTGTCCT---CTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCG 23746 |||| | |||| || ||||| || || || | || | | ||| || || Sbjct 731 GAGTCCGAGGCCATGGT---GAGTAAGAAGCAGGAGGAGAGCTGTGGTCGGGGTGTGGCT 675 Query 23747 GCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTG 23806 || ||| || || ||| ||| || ||||||||||| | || | || |||||||| Sbjct 674 GCGTTGAAGAGCGTGGGGGAGGCATGTGTAAAGTATCCCTGGGAGAGGAGGTTGTACGTC 615 Query 23807 TCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTAT 23866 |||||| | || | ||| || ||||| || || | || || ||||||| ||||| Sbjct 614 TCGATGATGCTCTCCACGTCTTCCCCGTGGATGCCCACGGACACACGCATCAACATGTGC 555 Query 23867 TGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 || || | || ||| | | ||| || |||| || || || | || || Sbjct 554 TGTGGGCGCTCCACGATCTTCTTCCCG---ATCTTGAGGAGGTAGCTCCGCTCCAGGGTC 498 Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGG 23983 || || || || |||| ||| |||||| || |||| || ||||| || || | ||| Sbjct 497 TTGAAGCCGAAGTAGTTGTAGGAAAAGTCCCGGTCGTAGACGATGGCGGAGTTGAGGCGG 438 Query 23984 TACGCATTGGCAGCGATGAT 24003 | | | | ||| |||||| Sbjct 437 TTCTCGTGGGCCATGATGAT 418 >seq271769 Length=1390 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 |||| | |||||||| ||||| ||||| || || ||||| || |||||| | || || | Sbjct 653 AATCCAGGATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGG 712 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 | || ||||| | |||| | || || || ||| | ||| |||||||| | || Sbjct 713 AGCCCTCCGATACCATCGAGAACGTGAAGACCAAGA-TCCAGGATAAGGAAGGAATTCCC 771 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || || ||||||||| | || ||||||||||| ||| | || || Sbjct 772 CCAGATCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAGGA 815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444158208558720