Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq28030 102 2e-16 >seq28030 Length=5412 Score = 102 bits (112), Expect = 2e-16 Identities = 286/436 (66%), Gaps = 5/436 (1%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 || ||||| || || ||||| || ||||| || | || || |||||||||||| | Sbjct 1683 GCTTTTGCGGCCGTGGAAGGGATTTTCTTCTCCGGGTCCTTTGCTTCCATTTTCTGGCTG 1624 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | || | ||||||| ||||| | ||| || || |||||||| | |||||| Sbjct 1623 AAGAAGCGTGGACTCATGCCTGGGCTCACGTTCTCTAACGAACTCATTTCTCGTGACGAA 1564 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCA 102100 || ||||| |||||||| ||| | |||| | | | | | | | ||| || || Sbjct 1563 GGGCTTCACACAGACTTTGCCTGCCTCATGTTCAGACA---TCTCGCTAATAAGCCCTCT 1507 Query 102101 AGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACA 102160 || |||| ||||| || || ||||| || || || || |||||| Sbjct 1506 GTGGAGCGGATCACGGAAATCGTTCGAGATGCCGTTGCGATCGAGAGCGAGTTCCTCACA 1447 Query 102161 GTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAA 102220 | | || || || | | | |||||||| || | | ||| |||||||| || Sbjct 1446 GAGGCTCTTCCCGTGCGAATGCTCGGAATGAATTGTGATTCCATGGTGCAGTACATCAAA 1387 Query 102221 TTTGTGGCAGATAAACTATTGGTTGAAATGGGACT-AGAAAAGCACTATAATGTTACCAA 102279 ||||| || ||| ||| | || || | |||| ||| ||| ||| | || Sbjct 1386 TTTGTCGCGGATCGACTCCTTGTAGAGCT-TGACTGCCCCAAGATCTACAATAATGAAAA 1328 Query 102280 CCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAG 102339 |||||| || ||||| ||||||||||| || ||||| ||||| ||||| |||| Sbjct 1327 CCCCTTTGACTTTATGGAAAATATTTCCCTGGATGGAAAGACAAACTTCTTTGAGAAGAA 1268 Query 102340 AGTCGCCGAGTATCAA 102355 ||| | || |||||| Sbjct 1267 AGTGGGAGAATATCAA 1252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 985924624748280