Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq28030 221 2e-52 seq285389 95.1 2e-14 seq244135 82.4 1e-10 >seq28030 Length=5412 Score = 221 bits (244), Expect = 2e-52 Identities = 619/945 (66%), Gaps = 44/945 (5%) Strand=Plus/Plus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 33291 |||| ||||| ||||||| | ||| | | ||||| | ||||| || || | Sbjct 1191 TTTAGAAGTCGGCATCTAACGTAAATTTACGTTCTTCGGGCTTTGACATCACACCGGCCT 1250 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 |||| ||||| ||||| || || || || || || ||||| |||| || ||||||| Sbjct 1251 TTTGATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTTT 1310 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCA 33411 |||| || ||||| || || | |||||| || || | | | || || | Sbjct 1311 CCATAAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCAGTCAAGCTCTACAAGGA 1370 Query 33412 ATCTATCTGCGACGAATTCTATATATGTTTTCATCATT---TCACAATTCATTCCTATGA 33468 || ||| ||||| |||| || || | || ||| |||||||||||||| | | Sbjct 1371 GTCGATCCGCGACAAATTTGATGTAC---TGCACCATGGAATCACAATTCATTCCGAGCA 1427 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || ||||||||| | || || || || || || | || |||| | Sbjct 1428 TTCGCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCATCT------- 1480 Query 33529 TAAATCTAACGGTTTC-----TTCACTCGGTGGATG---TAATAA----ATGTTTAAACA 33576 | |||| |||| | | ||| || | || || |||| | |||| Sbjct 1481 -----CGAACGATTTCCGTGATCCGCTCCACAGAGGGCTTATTAGCGAGATGTCTGAACA 1535 Query 33577 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACG 33636 | | || || || || ||| || || ||||| | | ||| | ||||||||| |||| Sbjct 1536 TGAGGCAGGCAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACG 1595 Query 33637 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAA 33696 |||| || ||||| || |||||||| || ||||| || |||||||| || || ||||| | Sbjct 1596 TGAGCCCAGGCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGA 1655 Query 33697 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGT 33753 |||| || ||||| || || ||||| || || | || ||||||| | | | | | | Sbjct 1656 AGAAAATCCCTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAG 1715 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 || ||||||||||||||||| | |||||||||| | | ||| | | || | || Sbjct 1716 ACTGCGTCCACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAAGTTGTCCAGGG 1775 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACT 33871 | |||||||| ||||| | |||| || | ||| || || || | || || | Sbjct 1776 CGTTAAAGAGGCGACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAATGAGTAATGAGT 1835 Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 | |||||| || ||||||||||| ||||| | |||||| || ||||| |||| || || Sbjct 1836 A--CATTTCAGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTC 1893 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 |||| || || || | || || || | | || ||||| || ||||| ||| Sbjct 1894 AGTAACTTGGACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGATTCCGTCAGA 1953 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCTGGTGTTAGTTT 34048 || || ||||| || | ||||| ||| ||||| | |||||| | | Sbjct 1954 TGCAGCGAAAAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCATTCAGACGCTC 2013 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 | |||||| | |||| || | |||||| ||||| || ||||| || || | Sbjct 2014 TTCCCAATCTAGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGCTGGCAAC 2073 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 || ||||| ||||| ||||||||||| | ||||||| |||||| Sbjct 2074 GGCTTTTTTGTACATGTTCCAGATGTCTGGGTATTGGA-TGGGAA 2117 >seq285389 Length=790 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 ||||| |||||||||||| ||| | ||||| || ||||| ||||| |||| | | Sbjct 579 ACTCCAGCTTTTTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAGT 638 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 ||||| | ||||| || ||||| ||||| ||||||||| | ||||| || | || Sbjct 639 GATATCATATCCATAAAGTCAAAAGGATTAGTAACATTGAATTCTTTTTCGCATTCTAAC 698 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 ||| | | |||||| | ||||| |||| |||| | |||||| || ||||||| Sbjct 699 TCAACTAAGAGTCTATCAGTTACGAACTCTAAATATTGTGTCATCAGATCTGAATTCATA 758 Query 33462 CCTAT 33466 || || Sbjct 759 CCAAT 763 >seq244135 Length=507 Score = 82.4 bits (90), Expect = 1e-10 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 62394 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62453 |||||||| || | ||| | || || ||||||||| ||||||||| || | | ||| Sbjct 264 AATTCTCCTGAAAGTACACGACGGGTATAAATATTAGAGGTATACGGCTCAAAAGCTTCA 205 Query 62454 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 |||||||| ||||| || | || || || || ||||||||||| || ||||| Sbjct 204 TTATTTCCTAAAATCTGTGATGTAGAAGCTGTAGGCATAGGTGCTACTAATAA 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627545407044480