Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq28030 127 2e-24 >seq28030 Length=5412 Score = 127 bits (140), Expect = 2e-24 Identities = 555/862 (64%), Gaps = 26/862 (3%) Strand=Plus/Plus Query 11338 CTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396 |||||||||||| | ||| || | || || || || ||||| || || || || |||| Sbjct 1249 CTTTTGATATTCTCCCACT-TTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATAT 1307 Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTA 11456 ||||||||| ||| || || | |||| ||| || || | | |||| | Sbjct 1308 TTTCCATAAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCAGTCAAGCTCTACAA 1367 Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516 | || ||| ||||| |||| || ||||| ||| || ||||||||| || | | Sbjct 1368 GGAGTCGATCCGCGACAAATTTGATGTACTGCACCATGGAATCACAATTCATTCCGAGCA 1427 Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC---AATGA 11573 ||| |||| ||| |||| | ||||| | || || ||| ||||| || || Sbjct 1428 TTCGCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACGA 1487 Query 11574 TTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACG 11633 || || ||| || ||| ||| || || | |||| | ||||| | || | Sbjct 1488 TT-TC--CGTGATCCGCTCCACAGAGGGCTTATTAGCGAGATGTCTGAACATGAGGCAGG 1544 Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693 |||| || || | |||||||| | | || ||||| ||||| || || | || | Sbjct 1545 CAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAG 1604 Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 |||| | ||| || || || | ||| || || | |||||| || || || ||||| || | Sbjct 1605 GCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCC 1664 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA---TATCC 11810 | ||||| || ||||| |||| | || |||||| | | |||| ||| Sbjct 1665 CTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCGTCC 1724 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTA-CGCATTCCATTGTTTCTATAGCGTTAAAT 11869 | ||| |||||| |||| ||||||| | ||| | | | || | |||||||| Sbjct 1725 ACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAAGT-TGTCCAGGGCGTTAAAG 1783 Query 11870 AAATG-CATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTC 11928 | | | |||| || | ||||| | | ||| || || || | ||| |||||||| Sbjct 1784 AGGCGACCCTTTTCCTCT-TTATCCTTGATATAGGTGTCAATGAGTAATGAGTACATTTC 1842 Query 11929 TGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTG 11988 || ||||| ||||| || || | ||||| |||||||| ||||| || || | | || Sbjct 1843 AGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTCAGTAACTTG 1902 Query 11989 TACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA-- 12046 || || | || | || | | |||||||| || || || || ||||||| Sbjct 1903 GACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGATTCCGTC---AGATGCAGC 1959 Query 12047 -AAAAATGCTAGTATATGTTTTATAAAGTA---TTTTTCGTC-TTTAGTTAATTTATCCC 12101 ||||| || || | ||| ||| || || | |||||| || || | | |||| Sbjct 1960 GAAAAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCATTCAGACGCTCT-TCCC 2018 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 |||| ||| || | ||| || ||||| || ||||| || || || || | || Sbjct 2019 AATCTAGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGCTGGCAACGGCTT 2078 Query 12162 GTTTATACATTTTCCAGATATC 12183 ||| ||||| |||||||| || Sbjct 2079 TTTTGTACATGTTCCAGATGTC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466834503079040