Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq28030 212 8e-50 seq244135 89.7 7e-13 >seq28030 Length=5412 Score = 212 bits (234), Expect = 8e-50 Identities = 406/595 (68%), Gaps = 10/595 (2%) Strand=Plus/Plus Query 36142 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 36201 |||| | ||||| | || || || || ||| || || ||||| | | ||| | ||| Sbjct 1525 ATGTCTGAACATGAGGCAGGCAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTC 1584 Query 36202 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 36261 ||| || |||||||| || ||||| || |||||||| || ||||| || ||||| ||||| Sbjct 1585 GTTAGAGAACGTGAGCCCAGGCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAA 1644 Query 36262 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC 36321 || || || |||||||| ||||| || |||||||| || || | || ||||||| | Sbjct 1645 GGACCCGGAGAAGAAAATCCCTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGA 1704 Query 36322 GGCACTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 36378 ||| | | || ||||||||||||||||| | |||||||||| | | ||| | Sbjct 1705 AGCAGAGGTAGACTGCGTCCACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAA 1764 Query 36379 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 36438 | || | || |||||||| ||||| | |||| || | ||| || ||||| Sbjct 1765 GTTGTCCAGGGCGTTAAAGAGGCGACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAAT 1824 Query 36439 CA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 36496 | || || || |||||| || ||||||||||| ||||| | ||||| || ||||| Sbjct 1825 GAGTAATGAGTA--CATTTCAGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAG 1882 Query 36497 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 36556 |||| || || |||| || || || | || || || | | || ||||| || Sbjct 1883 CATCGCGCTTCAGTAACTTGGACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACG 1942 Query 36557 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTTT 36613 ||||||||| || || ||||| || | ||||| ||| ||||| | ||||| Sbjct 1943 ATTCCGTCAGATGCAGCGAAAAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCA 2002 Query 36614 GGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 36673 | | | |||||| | |||| || | |||||| ||||| || ||||| Sbjct 2003 TTCAGACGCTCTTCCCAATCTAGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAG 2062 Query 36674 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAA 36728 || || | || ||||| ||||| ||||||||||| | ||||| || |||| Sbjct 2063 AAGCTGGCAACGGCTTTTTTGTACATGTTCCAGATGTCTGGGTATTGGATGGGAA 2117 >seq244135 Length=507 Score = 89.7 bits (98), Expect = 7e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 65186 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 65245 ||||||||| || | ||| | || || ||||||||| ||||||||| || | || || Sbjct 265 AAATTCTCCTGAAAGTACACGACGGGTATAAATATTAGAGGTATACGGCTCAAAAGCTTC 206 Query 65246 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 ||||||||| ||||| || | || || || || ||||||||||| || ||||| Sbjct 205 ATTATTTCCTAAAATCTGTGATGTAGAAGCTGTAGGCATAGGTGCTACTAATAA 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655798309989440