Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq61270 161 8e-35 >seq61270 Length=8000 Score = 161 bits (178), Expect = 8e-35 Identities = 312/454 (69%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 20889 GGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAA 20948 ||||||||||| || || | || ||| | ||||| || ||||||||| || || Sbjct 7641 GGAAACGGACGGGGCTCCCGCTTCAACTGCTCCTCCAGGGCATTAACGTGGTTATTATAG 7582 Query 20949 ACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCG 21008 || ||||| || |||| || || | |||||| || || | || ||||| || || || Sbjct 7581 ACATGGGCATCCCCCAGGGAATGTATAAAGTCCCCTGGCTTAAGACCCGTCACATGGGCC 7522 Query 21009 ATCA-GATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 |||| ||| || || ||||| |||||||| |||||||| || || || || ||||| || Sbjct 7521 ATCATGAT-GGTTAGAAGGGCATAGCTGGCAATGTTAAATGGTACACCAAGACCCATATC 7463 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 || || | ||| |||| ||||| || |||||||| ||||| || ||||| |||| Sbjct 7462 AGCAGAGCGCTGATACATTTGGCAAGAAAGCTCCCCGTTCGCCACATAGAACTG-TACAA 7404 Query 21128 AAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAA 21186 || ||| || ||||| | ||||| || || | |||||| || ||||| | Sbjct 7403 GACAGTGGCACGGAGGCAAGGCCATTAAATGAAGATCTCTCGCGTTCCAAGCACACATCA 7344 Query 21187 CGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCA 21246 | || || ||||||| || || ||||| || | || | | ||||| |||| Sbjct 7343 CCATACGACGATCGTCCGGATTACTCTTAATGGTCTCAATAACCTTCCCAAGCTGATCCA 7284 Query 21247 CCCCCTGACCCTCGTAGTTGGCGT---CGGCCCCCCTGTACTCCGCCCCAAAATGTCTCC 21303 | |||| || |||||| || | || | |||||||| ||||| || |||| Sbjct 7283 CACCCTTCCCAGCGTAGTCTGCATGCATGGTATC---ATACTCCGCGCCAAAGTGCCTCC 7227 Query 21304 ACTGGAACCCGTACACCGGCCCCAGATCGCCCTC 21337 | || ||||| || |||||||| | ||| || || Sbjct 7226 ATTGAAACCCATAGACCGGCCCTAAATCTCCTTC 7193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426271294711680