Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq28030 122 6e-23 >seq28030 Length=5412 Score = 122 bits (134), Expect = 6e-23 Identities = 275/411 (67%), Gaps = 2/411 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 || |||||||| || ||||| | | || || ||||| ||||| |||| ||||||||| Sbjct 1683 GCTTTTGCGGCCGTGGAAGGGATTTTCTTCTCCGGGTCCTTTGCTTCCATTTTCTGGCTG 1624 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| ||| |||||||| ||| | |||| || ||||| | ||| ||||||||| Sbjct 1623 AAGAAGCGTGGACTCATGCCTGGGCTCACGTTCTCTAACGAACTCATTTCTCGTGACGAA 1564 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAG 22929 || || ||| |||||||| || | |||| || || | || || || || | | | Sbjct 1563 GGGCTTCACACAGACTTTGCCTGCCTCATGTTCAGACATCTCGCTAATAAGCCCTCTGTG 1504 Query 22930 GA-CGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCAAGA 22988 || || ||| ||||| | |||||||||| || |||| | ||| || ||| Sbjct 1503 GAGCGGATCAC-GGAAATCGTTCGAGATGCCGTTGCGATCGAGAGCGAGTTCCTCACAGA 1445 Query 22989 GGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACATACAGTT 23048 ||| || | | || || |||||| |||| ||| | |||||| | || Sbjct 1444 GGCTCTTCCCGTGCGAATGCTCGGAATGAATTGTGATTCCATGGTGCAGTACATCAAATT 1385 Query 23049 TGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGCCAATCC 23108 ||| || ||||| || || | | || | | | ||||| || || || || || Sbjct 1384 TGTCGCGGATCGACTCCTTGTAGAGCTTGACTGCCCCAAGATCTACAATAATGAAAACCC 1325 Query 23109 ATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 ||||| || ||||| || ||| | | || || || |||||||||||||| Sbjct 1324 CTTTGACTTTATGGAAAATATTTCCCTGGATGGAAAGACAAACTTCTTTGA 1274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354980545640248