Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq28030 208 1e-48 seq244135 87.8 3e-12 seq285389 86.0 9e-12 >seq28030 Length=5412 Score = 208 bits (230), Expect = 1e-48 Identities = 610/933 (65%), Gaps = 20/933 (2%) Strand=Plus/Plus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 49669 |||| ||||| |||||| | ||| | | ||||| | ||||| || || | Sbjct 1191 TTTAGAAGTCGGCATCTAACGTAAATTTACGTTCTTCGGGCTTTGACATCACACCGGCCT 1250 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 |||| ||||| ||||| || || || || || || ||||| |||| || ||||||| Sbjct 1251 TTTGATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTTT 1310 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 |||| || ||||| || || | ||| || || || | | | || || | Sbjct 1311 CCATAAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCAGTCAAGCTCTACAAGGA 1370 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATT---TCACAATTCATTCCTATAA 49846 || |||||||||||||| || || | || ||| |||||||||||||| | | Sbjct 1371 GTCGATCCGCGACAAATTTGATGTAC---TGCACCATGGAATCACAATTCATTCCGAGCA 1427 Query 49847 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 | || ||||||||| | || || || || || || | || |||||| | | Sbjct 1428 TTCGCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACGA 1487 Query 49907 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 49966 | | | || || || || | |||| | ||||| | || || | Sbjct 1488 TTTCCGTGATCCGCTCCACAGAGGGCTTATTAGCGAGATGTCTGAACATGAGGCAGGCAA 1547 Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026 | || ||| || || ||||| | | ||| |||||||| || |||||||| || |||| Sbjct 1548 AGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAGGCA 1607 Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTT 50086 | || |||||||| || ||||| || ||||| ||||| ||||| || ||||| || |||| Sbjct 1608 TGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCCCTT 1667 Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCA---TGTATCCACT 50143 | || || ||||| || | | || ||||||| | || | | || |||||| Sbjct 1668 CCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCGTCCACT 1727 Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 ||||||||||| | |||||||||| | | ||| | | || | ||| |||||||| Sbjct 1728 TTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAAGTTGTCCAGGGCGTTAAAGAGGC 1787 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGA 50261 ||||| | |||| || | ||| || || || | || || || |||||| || Sbjct 1788 GACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAATGAGTAATGAGTA--CATTTCAGA 1845 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321 ||||||||||| ||||| | |||||| || ||||| |||| || || |||| || || Sbjct 1846 GTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTCAGTAACTTGGAC 1905 Query 50322 TTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 50381 || | || || || | | || ||||| || ||||||||| || || ||||| Sbjct 1906 CTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGATTCCGTCAGATGCAGCGAAAAA 1965 Query 50382 CGCCAATACATGTTTTATAAAAT---GTTTTTCGTTGGGTGTTAGTTTATTCCAATCATT 50438 || | ||||| ||| |||| | | ||||| | | | |||||| Sbjct 1966 GGCAAGGACATGAGATATGAAATAACGCTCTTCGTCATTCAGACGCTCTTCCCAATCTAG 2025 Query 50439 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 | |||| || | ||| || ||||| || ||||| || || | || ||||| || Sbjct 2026 GGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGCTGGCAACGGCTTTTTTGTA 2085 Query 50499 CATATTCCAGATGTCATGATATTGGATTGGGAA 50531 ||| ||||||||||| | ||||||| |||||| Sbjct 2086 CATGTTCCAGATGTCTGGGTATTGGA-TGGGAA 2117 >seq244135 Length=507 Score = 87.8 bits (96), Expect = 3e-12 Identities = 128/178 (72%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 ||||||||| || | ||| | || || ||||||||| |||||| || || | | ||| Sbjct 265 AAATTCTCCTGAAAGTACACGACGGGTATAAATATTAGAGGTATACGGCTCAAAAGCTTC 206 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184 ||||||||| ||||| || | || || || || ||||||||||| || ||||| ||| Sbjct 205 ATTATTTCCTAAAATCTGTGATGTAGAAGCTGTAGGCATAGGTGCTACTAATAATGAATT 146 Query 79185 TCTAAGACCGTATGATCTGATTTTATCTTT---TAGAGATTCCCAATCCCAAAGATCA 79239 | | |||| || || ||| ||||| || ||| ||||||||||| || || Sbjct 145 ACGCACACCG--TGCTC-CATTACCTCTTTACGTAATGATGCCCAATCCCAACGACCA 91 >seq285389 Length=790 Score = 86.0 bits (94), Expect = 9e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719 ||||| |||||||||||| ||| | ||||| || ||||| ||||| |||| | | Sbjct 579 ACTCCAGCTTTTTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAGT 638 Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779 ||||| | ||||| || ||||| ||||| |||||||| | ||||| || | || Sbjct 639 GATATCATATCCATAAAGTCAAAAGGATTAGTAACATTGAATTCTTTTTCGCATTCTAAC 698 Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 49839 ||| | | |||||| | || || |||| |||| | |||||| || ||||||| Sbjct 699 TCAACTAAGAGTCTATCAGTTACGAACTCTAAATATTGTGTCATCAGATCTGAATTCATA 758 Query 49840 CCTAT 49844 || || Sbjct 759 CCAAT 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715677501650240