Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq28030 176 4e-39 seq285389 111 2e-19 >seq28030 Length=5412 Score = 176 bits (194), Expect = 4e-39 Identities = 577/887 (65%), Gaps = 21/887 (2%) Strand=Plus/Plus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||||||||| | ||| | || ||||||||||| || || || ||||| || |||||| Sbjct 1250 TTTTGATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTT 1309 Query 13641 TCCATAAAATCAAATGGATTT--ATTGACATAAACACTTTATCACAACCTAGTTCTAATA 13698 |||||||| ||||| || ||| ||| || | || || | || |||| | Sbjct 1310 TCCATAAAGTCAAAGGGGTTTTCATTATTGTAGATC--TTGGGGCAGTCAAGCTCTACAA 1367 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 | | || ||| || | ||| | || || || ||| ||||||||||||| || | | Sbjct 1368 GGAGTCGATCCGCGACAAATTTGATGTACTGCACCATGGAATCACAATTCATTCCGAGCA 1427 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | || |||| | || | || || | || || | || || ||| | | Sbjct 1428 TTCGCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACGA 1487 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878 | || || ||| ||| || || |||||| | || || | || |||| Sbjct 1488 TTTCCGTGATCCGCTCCACAGAGGGCTTATTAGCGAGATGTCTGAACATGAGGCAGGCAA 1547 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | || ||||| || || || | | ||| |||||||| || || || | || |||| Sbjct 1548 AGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAGGCA 1607 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 | | ||| || || || | ||| || || | |||||| |||||||| ||||| || || | Sbjct 1608 TGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCCCTT 1667 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14058 | || || ||||| ||||| | ||| |||||||| || || | | |||| | Sbjct 1668 CCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCGTCCACT 1727 Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14118 || |||||| ||| || |||| |||| | | | || | || ||||| | Sbjct 1728 TTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAAGTTGTCCAGGGCGTTAAAGAGGC 1787 Query 14119 ATTCCTT---CTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 |||| ||||||| | ||||| || | || ||||| ||||| |||||||||| Sbjct 1788 GACCCTTTTCCTCTTTA-TCCTTGATAT--AGGTGTCAATGAGTAATGAGTACATTTCAG 1844 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 |||| |||||||| || || | |||||| ||||| ||||||| ||||| | ||| | Sbjct 1845 AGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTCAGTAACTTGGA 1904 Query 14236 CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14295 | || | | || | ||| | | || |||||||| || || ||| || || |||| Sbjct 1905 CCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGATTCCGTCAGATGCAGCGAAAA 1964 Query 14296 ATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAATC 14350 | || | | ||| | || || || ||||||| | || | | | || |||||| Sbjct 1965 AGGCAAGGACATGAGAT--ATGAAATAACGCTCTTCGTCATTCAGACGCTCTTCCCAATC 2022 Query 14351 --GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14408 || | |||||| ||||| || || || || ||||| || || || || |||||| Sbjct 2023 TAGGGT--ATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGCTGGCAACGGCTTTT 2080 Query 14409 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 || ||||| ||| || ||| ||| || |||| || ||||| Sbjct 2081 TTGTACATGTTCCAGATGTCTGGGTATTGGATGGGAAGGACGACAAA 2127 >seq285389 Length=790 Score = 111 bits (122), Expect = 2e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 |||||| ||||| ||||| ||||||||||| || |||||||||| |||||||| | Sbjct 587 TTTTTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAGTGATATCAT 646 Query 13640 TTCCATAAAATCAAATGGATTTATTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 13698 |||||||| ||||| ||| ||| | ||| | || |||| || || ||| || | || Sbjct 647 ATCCATAAAGTCAAAAGGA-TTAGTAACATTGAATTCTTTTTCGCATTCTAACTCAACTA 705 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 | |||||||| | ||||| | |||||| | ||| | ||| |||||||||| |||| Sbjct 706 AGAGTCTATCAGTTACGAACTCTAAATATTGTGTCATCAGATCTGAATTCATACCAATTA 765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477997285294400