Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq28030 154 1e-32 >seq28030 Length=5412 Score = 154 bits (170), Expect = 1e-32 Identities = 408/613 (67%), Gaps = 19/613 (3%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 |||||| | || || | || ||||| || ||||| || || || | | ||| ||| Sbjct 1523 AGATGTCTGAACATGAGGCAGGCAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGT 1582 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 ||||| || || || | || ||||| | ||| || || || | ||| || || | ||| Sbjct 1583 TCGTTAGAGAACGTGAGCCCAGGCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCA 1642 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || ||||| ||||| || || || || || ||||| ||||| | ||| |||||||| Sbjct 1643 AAGGACCCGGAGAAGAAAATCCCTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAG 1702 Query 13822 GATGCTTTTTT-GTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880 || || | | || |||| ||| |||||| ||| || |||| |||| | Sbjct 1703 GAAGCAGAGGTAGACTGCG-TCCACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGG 1761 Query 13881 CATTGTTTCGATTGCATTGAATAAATGTTCCTT---CTCTTTAGTACTTGAAATGTATGT 13937 | | || | || || || | | |||| ||||||| | ||||| || | || Sbjct 1762 GAAGTTGTCCAGGGCGTTAAAGAGGCGACCCTTTTCCTCTTTA-TCCTTGATAT--AGGT 1818 Query 13938 ATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATA 13997 ||||| ||||| |||||||||||||| |||||||| || || | |||||| ||||| Sbjct 1819 GTCAATGAGTAATGAGTACATTTCAGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATA 1878 Query 13998 AAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATT 14057 || |||| ||||| | ||| ||||| | | || | || | | ||| ||||| Sbjct 1879 GAAGCATCGCGCTTCAGTAACTTGGACCTCAGCGGTGAAACGCTCGACGATGTTCTCATT 1938 Query 14058 AACAATACCATCACTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCT 14115 ||| || || ||| || || ||||| || | | ||| | || || || ||||| Sbjct 1939 AACGATTCCGTCAGATGCAGCGAAAAAGGCAAGGACATGAGAT--ATGAAATAACGCTCT 1996 Query 14116 TCATTGTTGA---GTTTTTTCCAATC--GGCTAAATCCTTAGAAAGATCTACTTCATCAA 14170 || | || | | | || |||||| || | |||||| ||||| || || || | Sbjct 1997 TCGTCATTCAGACGCTCTTCCCAATCTAGGGT--ATCCTTGCTGAGATCCACCTCTTCGA 2054 Query 14171 CTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAG 14230 | ||||| || || || || |||||||| ||||| ||| || ||| ||| || | Sbjct 2055 CCGTCCAGAAGCTGGCAACGGCTTTTTTGTACATGTTCCAGATGTCTGGGTATTGGATGG 2114 Query 14231 GAAAAACTACAAA 14243 ||| || ||||| Sbjct 2115 GAAGGACGACAAA 2127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476862195186240