Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq28030 201 2e-46 seq182767 95.1 2e-14 seq244135 87.8 2e-12 >seq28030 Length=5412 Score = 201 bits (222), Expect = 2e-46 Identities = 407/597 (68%), Gaps = 13/597 (2%) Strand=Plus/Plus Query 42049 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTC 42108 |||| | ||||| | || || || || ||| || || || || | | ||| | ||| Sbjct 1525 ATGTCTGAACATGAGGCAGGCAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTC 1584 Query 42109 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAA 42168 ||| || |||||||| || ||||| || |||||||| || ||||| || || || ||||| Sbjct 1585 GTTAGAGAACGTGAGCCCAGGCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAA 1644 Query 42169 TGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC 42228 || || || ||||| || ||||| || |||||||| || || | || ||||||| | Sbjct 1645 GGACCCGGAGAAGAAAATCCCTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGA 1704 Query 42229 GGCACTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 42285 ||| | | || ||||||||||||||||| | |||||||||| | | ||| | Sbjct 1705 AGCAGAGGTAGACTGCGTCCACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAA 1764 Query 42286 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGAT 42345 | || | ||| |||||||| ||||| | |||| || | ||| || || || Sbjct 1765 GTTGTCCAGGGCGTTAAAGAGGCGACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAAT 1824 Query 42346 CA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 42403 | || || || |||||| || ||||||||||| ||||| | |||||| || ||||| Sbjct 1825 GAGTAATGAGTA--CATTTCAGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAG 1882 Query 42404 CATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACT 42463 |||| || || ||||| || || || | || || || | | || || || || Sbjct 1883 CATCGCGCTTCAGTAACTTGGACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACG 1942 Query 42464 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCC 42520 ||||||||| || || ||||| || | ||||| ||| ||||| | ||||| | Sbjct 1943 ATTCCGTCAGATGCAGCGAAAAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGT-C 2001 Query 42521 GGTGTTAATTTATT-CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCA 42579 | | | || |||||| | |||| || | ||| || ||||| |||||||| Sbjct 2002 ATTCAGACGCTCTTCCCAATCTAGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCA 2061 Query 42580 AAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 || || | || ||||| ||||| |||||||| || | ||||| | |||||| Sbjct 2062 GAAGCTGGCAACGGCTTTTTTGTACATGTTCCAGATGTCTGGGTATTGGA-TGGGAA 2117 >seq182767 Length=2084 Score = 95.1 bits (104), Expect = 2e-14 Identities = 269/411 (65%), Gaps = 7/411 (2%) Strand=Plus/Minus Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 |||||||| || || || |||| || || || ||||| || || || |||| | Sbjct 1982 CCTGTTTTGAGTCCAAGCTTCCACCCATAGAAGTGCATGGAGGTGAGCTTTCCATAGTTG 1923 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || | || ||||||||||| | ||| || ||||| ||||| || || | |||||| Sbjct 1922 GGCTGTGCGATGTGAATATTGAGACTCTGGCTCTGATCAATGAACGCCCCTCGATCTGCA 1863 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||||| | ||| ||||| |||| || ||||| | || ||||| | ||| || Sbjct 1862 GCCATTTGAAGGATGGTCTTCTGTGAGATCTCCCAGACGGTCTTATAGAGCGCCTTGATG 1803 Query 71029 TCTTCTGGAAGGTTT---GTATTC--TGAATGGATCCACCATCTGCAATAATCCTATTTT 71083 || || |||| ||| | || | |||| ||||||| | ||||| || | | | Sbjct 1802 TCATCAGGAA--TTTCCGGGATCCCTTGAACGGATCCATTGTTGGCAATTATATTTTGCT 1745 Query 71084 TGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTA 71143 | || || |||| ||| | | || || | | | | || |||||| | || || | Sbjct 1744 TCATGTCCTCATCCCAGAGATCAAGTTCCGTGAGATCCCGGAGAAGATGATGGTTCACGA 1685 Query 71144 CTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTG 71203 | || || || ||||| | || | || | ||| || || ||| || | || | Sbjct 1684 CCTGGAACTCCCCAGAGAGGACACGTCGGGAGTAGATGTTGGAGGTGTAGGCCTCGATGC 1625 Query 71204 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254 ||| || || |||| ||||| || || || || || ||||| || |||| Sbjct 1624 CCTCGTTGTTCCCCAGGATTTGTGCCGTGGAGGCCGTGGGCATGGGCGCCA 1574 >seq244135 Length=507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 71148 AAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTC 71207 ||||||||| || | ||| | ||| || ||||||||| ||||||||| || | | || Sbjct 265 AAATTCTCCTGAAAGTACACGACGGGTATAAATATTAGAGGTATACGGCTCAAAAGCTTC 206 Query 71208 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 71260 ||||||||| ||||| || | || || || || ||||||||||| || |||| Sbjct 205 ATTATTTCCTAAAATCTGTGATGTAGAAGCTGTAGGCATAGGTGCTACTAATA 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668717931108160