Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq11950 86.0 6e-12 >seq11950 Length=2906 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || || | ||||| || || |||| || ||||| || || |||||||| ||| Sbjct 1346 TGTCCCCCACGAAGACGCAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 1287 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | |||| || |||||||| || || || |||||| ||| |||||||| || Sbjct 1286 GAGAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGG 1227 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||||||||| || || || | | ||| | ||||| | || || Sbjct 1226 GGAATTCCTTCTTTGTCCTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGATGGCTCA 1167 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || |||| ||| | || ||||| || | || || ||||| || ||||| Sbjct 1166 ACCTCAAGAGTAATGGTTTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505185244149120