Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq28030 131 2e-25 seq124498 123 4e-23 seq61270 120 4e-22 >seq28030 Length=5412 Score = 131 bits (144), Expect = 2e-25 Identities = 589/906 (65%), Gaps = 32/906 (4%) Strand=Plus/Minus Query 124999 TTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGA 125058 |||||||| || | ||||| ||| | ||||||||||| || ||| ||| |||| Sbjct 2117 TTCCCATCCAATACCCAGACATCTGGAACATGTACAAAAAAGCCGTTGCCAGCTTCTGGA 2058 Query 125059 CGGTCGAAGAGGTCGATCTGTCCAAGGAC-CTGTACGATTGGGAGACTCGTTTGACTGAA 125117 ||||||||||||| ||||| |||||| | || |||||||| ||| ||| ||| Sbjct 2057 CGGTCGAAGAGGTGGATCTCAGCAAGGATACCCTA-GATTGGGAAGAGCGTCTGAATGAC 1999 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||||| | || ||||| || | | ||||| || || | || || |||||||| Sbjct 1998 GAAGAGCGTTATTTCATATCTCATGTCCTTGCCTTTTTCGCTGCATCTGACGGAATCGTT 1939 Query 125178 AACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGC 125234 || || || | || || || ||| | ||| | ||| || | || | | ||| Sbjct 1938 AATGAGAACATCGTCGAG-CGTTTCACCGCTGAGGT--CCAAGTTACTGAAGCGCGATGC 1882 Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 || || || || || || || || ||| | ||||| ||||||||||| ||| ||| Sbjct 1881 TTCTATGGCTTTCAGGTCGCCATCGAAAACATTCACTCTGAAATGTACTCATTACTCATT 1822 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGT 125353 |||| || || ||| | | ||| || |||||||||| | |||| | Sbjct 1821 GACACCTATATCAAGGATAAAGAG-GAAAAGGGTCGCCTCTTTAACGCCCTGGACAACTT 1763 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CTT 125412 || |||| | || |||||| |||| ||||| || | | || | ||| Sbjct 1762 CCCTGCTATTCAAAAGAAGGCTGCTTGGGCTCAAAAGTGGA-CGCAGTCTACCTCTGCTT 1704 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 | | | || || | | || || || ||||| || || || ||||| || || | Sbjct 1703 CCTTTGGAGAGCGAATCATAGCTTTTGCGGCCGTGGAAGGGATTTTCTTCTCCGGGTCCT 1644 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 |||| |||| || ||||| |||||||| ||||||||||| || || ||| | ||||| Sbjct 1643 TTGCTTCCATTTTCTGGCTGAAGAAGCGTGGACTCATGCCTGGGCTCACGTTCTCTAACG 1584 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACT 125592 | | || ||||| ||||| || || ||| ||||||||| || |||| || Sbjct 1583 AACTCATTTCTCGTGACGAAGGGCTTCACACAGACTTTGCCTGCCTCATGTT---CAGAC 1527 Query 125593 ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGG-TCATCAACATTGTAACCGATGCC 125651 ||| || | | | | || | || | || ||| | || || |||||| Sbjct 1526 ATC----TCGCTAAT---AAGCCCTCTGTGGAGCGGATCACGGAAATCGTTCGAGATGCC 1474 Query 125652 GTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAAC 125711 || ||| || ||||| || || || | || || || | ||| | || ||||| Sbjct 1473 GTTGCGATCGAGAGCGAGTTCCTCACAGAGGCTCTTCCCGTGCGAATGCTCGGAATGAAT 1414 Query 125712 TG-CAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC-TGTACGAG-TTG 125768 || | | | |||| ||||||| | ||||| || ||||| || | |||| ||| ||| Sbjct 1413 TGTGATTCCATGGTGC-AGTACATCAAATTTGTCGCGGATCGACTCCTTGTA-GAGCTTG 1356 Query 125769 ATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTA 125828 | | ||| |||||| ||||| | || |||||||| || ||| | || || || Sbjct 1355 ACT-GCCCCAAGATCTACAATAATGAAAACCCCTTTGACTTTATGGAAAATATTTCCCTG 1297 Query 125829 GAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA-CAAACGCTACGGTGTCGG 125887 || || ||||| ||||| || |||||||| || | || || |||| | |||||| | Sbjct 1296 GATGGAAAGACAAACTTCTTTGAGAAGAAAGTGGGAGAATATCAAAAG-GCCGGTGT-GA 1239 Query 125888 TGTCAA 125893 |||||| Sbjct 1238 TGTCAA 1233 >seq124498 Length=1304 Score = 123 bits (136), Expect = 4e-23 Identities = 238/351 (68%), Gaps = 0/351 (0%) Strand=Plus/Plus Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || |||||||||||||| || || |||||| | || ||| | ||||||||||| || | Sbjct 34 CGGGCCAGGGACTTGTTCTACGCCCTCTGGATCCCGGATCTCTTCATGAAGCGTGTGGAA 93 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || | |||| |||||| | |||||||| | | || || | | || |||||| Sbjct 94 GAGGATGGCGTTTGGAGCTTGATGTGCCCGCATGAGAGCCCTGGATTAGCGGACTGCTGG 153 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGA 97163 || || | |||||| | |||| | || ||| || || || | ||| Sbjct 154 GGAGAGGCCTTTGAGAGCTTGTACTTGAAGTATGAGGCGGAAGGGAATTATAGGCGACAG 213 Query 97164 GTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 ||| || | | | | ||| |||||||| | | | || | ||||| ||||| || Sbjct 214 GTCCCGGCTCAAAAGATCTGGGAGGCCATCATTGAGTCGCAAATCGAGACGGGAACGCCT 273 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283 || || |||||||||||| | || || || ||| |||| || | |||||||| Sbjct 274 TATATGCTCTACAAGGATGCTTGCAACCGAAAGTCCAATCAACAGAACCTAGGCACCATT 333 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 || |||||||||| |||||||||||||| |||||| | | ||||| ||| Sbjct 334 AAATGCTCCAATCTATGCACGGAAATTGTGGAGTACAGCGCACCGGATGAG 384 >seq61270 Length=8000 Score = 120 bits (132), Expect = 4e-22 Identities = 369/565 (65%), Gaps = 8/565 (1%) Strand=Plus/Plus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 |||| || ||| | ||||| || || || || || |||||||||| ||| | |||||| Sbjct 7191 AAGAAGGAGATTTAGGGCCGGTCTATGGGTTTCAATGGAGGCACTTTGGCGCGGAGTATG 7250 Query 70122 -TAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGAC 70180 || ||| | ||||||| | || ||||||| ||||| | || | ||||| Sbjct 7251 ATACCATGCATG-CAGACTACGCTGGGAAGGGTGTGGATCAGCTTGGGAAGGTTATTGAG 7309 Query 70181 ACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGAT 70240 || | |||| ||||| ||| | | || || ||||| | ||||| | |||| Sbjct 7310 ACCATTAAGAGTAATCCGGACGATCGTCGTATGGTGATGTGTGCTTGGAACGCGAGAGAT 7369 Query 70241 TTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACT---CGTACGAT 70297 | || |||||| | || ||||| |||||| | | ||||| || || ||| Sbjct 7370 CTTCATTTAATGGCCTTGCCTCCGTGCCACTGTCTTGTACAGTTCTATGTGGCGAACG-- 7427 Query 70298 GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTT 70357 || | || || ||| |||||||||| | ||| || ||||| || |||||||| ||| Sbjct 7428 GGGAGCTT-TCTTGCCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTACCATTT 7486 Query 70358 AACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCG 70417 |||||||| |||||| | | | || |||||| || || | || || || || | Sbjct 7487 AACATTGCCAGCTATGCCCTTCTAACCATCATGATGGCCCATGTGACGGGTCTTAAGCCA 7546 Query 70418 CACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTA 70477 || || |||| || | || || || || || ||| || ||| | | | | Sbjct 7547 GGGGACTTTATACATTCCCTGGGGGATGCCCATGTCTATAATAACCACGTTAATGCCCTG 7606 Query 70478 AAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTT 70537 ||| ||| | | |||||||| | || ||||| | | | | || || || Sbjct 7607 GAGGAGCAGTTGAAGCGGGAGCCCCGTCCGTTTCCTACCATTACGCTCAAGCGGAAGGTG 7666 Query 70538 GAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCT 70597 |||||||| || || |||| || || ||| |||| | || |||||||| ||||| Sbjct 7667 GAAAATATCGAGGACTTCAAGTTTGATGACTTTGAAATACATGGATACGATCCTCACCCT 7726 Query 70598 AAGATTCCCATGGTTCTGGCTGTTT 70622 |||||| ||||| ||||||||| Sbjct 7727 AAGATTTCCATGCCCATGGCTGTTT 7751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738385680724160