Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_004456.1 Length=43198 Score E Sequences producing significant alignments: (Bits) Value seq221573 95.1 3e-15 >seq221573 Length=809 Score = 95.1 bits (104), Expect = 3e-15 Identities = 257/387 (66%), Gaps = 20/387 (5%) Strand=Plus/Minus Query 30437 GAAACGAGACCCGCAATGGCTGAACAATACCTACACGGCGCAGAAGTCGTCGAAATTGAT 30496 |||| || |||| |||| |||| |||| | | ||||||| || ||||||||||| ||| Sbjct 421 GAAAGGAAACCCA-AATGCCTGAGCAATTCTTTCACGGCGTCGAGGTCGTCGAAATCGAT 363 Query 30497 AATGGGGCCCGCCCCATCCGCA----CCGCTCAAAGTGGCGTGATTGGTTTGGTGGGGAC 30552 | || |||| ||||| | | |||||| ||||| ||| | || || || Sbjct 362 ACCGGCACCCGGCCCATTCAAACTGTCCGCTC----CTCTGTGATCGGTCTTGTCGGCAC 307 Query 30553 GGCACCGGATGCCGATGCCACCGCCTTTCCTCTGAATACGCCGGTACTGATCGCCGGTAG 30612 || || |||| |||| | ||||| || || ||||| || ||||||| |||| Sbjct 306 CGCGCCCAATGCGGATGGTGACAAATTTCCACTTAACACGCCAGTTTTGATCGCGGGTAA 247 Query 30613 CCGCCGAGAAGCGGCCAAGCTGGGCGCAGGTGGTACATTGCCACAGGCAATTGATGGCAT 30672 ||| || || || ||||| || | || || ||||| || ||||||| | Sbjct 246 GCGCACCGAGGCCGCTAAGCTTGGTCTTGTCGGCACCTTGCCCGGTGCCATTGATGATGT 187 Query 30673 TTTTGACCAGACTGGCGCAGTGGTGGTGGTGATTCGCGTGGATGAGGGCG---TGGATAG 30729 |||||||| |||||||| | | | ||| | || || |||||||| |||| Sbjct 186 CTTTGACCAAGCTGGCGCAATCATTATTGTGGTGCGGGTCTCTGAGGGCGCAACGGAT-- 129 Query 30730 CGCGGCCACTCA-ATCCAACGTGATCGGCAAAGTGGATGCCGACACCGAGCAGTACACT- 30787 || | || || ||||| ||||||||| || ||| |||| || ||||| || || Sbjct 128 -GCCGAGACACATTTCCAATGTGATCGGCGGCGTTGATCCCGATACTGAGCA--ACGCTT 72 Query 30788 -GGCATTTTGGCTCTGCTGTCTGCCGA 30813 |||||| ||| || || |||||| Sbjct 71 GGGCATTCAGGCGCTCCTTGATGCCGA 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137638646670720