Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq2802 109 2e-19 >seq2802 Length=2961 Score = 109 bits (120), Expect = 2e-19 Identities = 289/435 (66%), Gaps = 10/435 (2%) Strand=Plus/Plus Query 53049 GACCTGACCAGCTGTGGGTGGCTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCT 53108 ||||| | ||||| |||||||||||| | ||||| || ||| ||| || || |||| Sbjct 762 GACCTAATCAGCTTTGGGTGGCTGATATAACTTATATCCCCACCTGGTCAGGTTTTGTCT 821 Query 53109 ATGTGGCGTTCATCATTGATGTGTTTGCCGGATACATTGTGGGGTGGCGGGT--CTCATC 53166 |||| || || | || ||||| | | | | || || || || |||||||| ||| Sbjct 822 ATGTCGCATTTGTTATCGATGTCTATTCACGTTATATCGTAGGTTGGCGGGTGAGTCA-- 879 Query 53167 GTCCATGGAGACGACATTCGTGCTGGATGCACTGGAGCAGGCGTTATGG-GCCCGTCGAC 53225 ||| |||| || | | ||||||||||||||||||||||| | ||| || | | | Sbjct 880 GTCGCTGGAAACTCCGCTGGTGCTGGATGCACTGGAGCAGGCAATTTGGTGCAGGAAGCC 939 Query 53226 --CGTCCGGCACGGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACAC 53283 | || | | |||||| ||| | || |||||| | || | ||||| Sbjct 940 TGAGAAAGGGTTGATTCATCACTCCGATCACGGCAGTCAGTACCTGTCAATCCGTTACAC 999 Query 53284 ACAGCGGCTTAAGGAAGCCGGATTACTGGCATCAACAGGAAGTACAGGCGACTCGTATGA 53343 | || | || || | | | || ||| || || | || || |||||||| Sbjct 1000 CGAACGATTGGCTGATGCTGAAATTGAAGCGTCAGTGGGTAGCATCGGTGATTCGTATGA 1059 Query 53344 CAACGCGATGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTAATACACCGT-AAGA 53402 ||| || ||||| ||| || |||| ||||| ||||| |||||||| | | | ||| Sbjct 1060 CAATGCAATGGCTGAGGCAATTAATGCGCTTTATAAAGCTGAGGTAATTCGGCATAAAGG 1119 Query 53403 GC--TGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAA 53460 || |||||| || || || ||| |||||||| | ||||| ||||||| || Sbjct 1120 GCCATGGAAAGGTATTGATGATGTTGAATATGCCACACTGAACTGGGTAGACTGGTTCAA 1179 Query 53461 CAATCGACGATTGCT 53475 |||||||||||| || Sbjct 1180 CAATCGACGATTACT 1194 Score = 84.2 bits (92), Expect = 8e-12 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 49708 GAACGTCAGCGTCTGAAAGAGCTGGAACGTGAAAATCGTGAACTGCGCCGCAGTAACGAT 49767 || ||| | | ||| |||| |||||||| || |||| |||| ||||||| || || Sbjct 255 GAGCGTGAACATCTCAAAGCCCTGGAACGCGAGAATCTTGAATTGCGCCGTGCCAATGAG 314 Query 49768 ATCCTTCGCCAGGCTTCCGCTTATTTTGCGAAGGCGGAGTTCGACCGCC 49816 || | ||| |||| || |||||||||||| |||||||| ||||||||| Sbjct 315 ATATTACGCAAGGCCTCTGCTTATTTTGCGCAGGCGGAGCTCGACCGCC 363 Score = 80.6 bits (88), Expect = 1e-10 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 52548 GAACGTCAGCGTCTGAAAGAGCTGGAGCGTGAAAATCGTGAACTGCGCCGCAGTAACGAT 52607 || ||| | | ||| |||| ||||| || || |||| |||| ||||||| || || Sbjct 255 GAGCGTGAACATCTCAAAGCCCTGGAACGCGAGAATCTTGAATTGCGCCGTGCCAATGAG 314 Query 52608 ATCCTTCGCCAGGCTTCCGCTTATTTTGCGAAGGCGGAGTTCGACCGCC 52656 || | ||| |||| || |||||||||||| |||||||| ||||||||| Sbjct 315 ATATTACGCAAGGCCTCTGCTTATTTTGCGCAGGCGGAGCTCGACCGCC 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184619474816064