Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq2802 145 3e-30 >seq2802 Length=2961 Score = 145 bits (160), Expect = 3e-30 Identities = 377/569 (66%), Gaps = 23/569 (4%) Strand=Plus/Minus Query 56232 GAAAGTGAACCGCCCCGGTTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGC---- 56287 || |||||| |||||||||||| |||| | || | | || | ||| || || Sbjct 1320 GATAGTGAATCGCCCCGGTTTTATCGGAGGGAGTCTCAATTGAG---TCATGCAGCTTTA 1264 Query 56288 -CAGATCATCGTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTAT 56346 |||| ||||||| | ||||||| |||||| || |||||||| || Sbjct 1263 GCAGACTCTCGTTTCATCT-----CATAATACAGTTTTTCAAACTCAGCCGGAGGTCGAT 1209 Query 56347 GGCCCAGCCTTCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCA 56406 || | | | || |||||||||||||| ||||||| ||||| | |||||||| Sbjct 1208 CTCCAATCGGCCTGAGTAATCGTCGATTGTTGAACCAGTCTACCCAGTTCAGTGTGGCAT 1149 Query 56407 GTTCCACTTCTGCACGGTTTTTCCA--GCTCTT-ACGGTGTATTACCTCCGCTTTGTAAA 56463 ||| || || || |||||| || ||| | | | |||||||| ||||| |||| Sbjct 1148 ATTCAACATCATCAATACCTTTCCATGGCCCTTTATGCCGAATTACCTCAGCTTTATAAA 1089 Query 56464 GACCATTGATGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATG 56523 | |||| || ||||||||| || ||||||||||| || || | || || ||| | Sbjct 1088 GCGCATTAATTGCCTCAGCCATTGCATTGTCATACGAATCACCGATGCTACCCACTGACG 1029 Query 56524 CCAGTAATCCGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTT 56583 | | | | || || | ||| || || || | ||||| |||||| ||| | Sbjct 1028 CTTCAATTTCAGCATCAGCCAATCGTTCGGTGTAACGGATTGACAGGTACTGACTGCCGT 969 Query 56584 TATCGCTGTGATGGATGGTGCCAGACGGACGA---CGGGCCCACAACGCCTGCTCCAGCG 56640 |||| |||||| || || | | | | | ||| | ||||||||||| | Sbjct 968 GATCGGAGTGATGAATCAACCCTTTCTCAGGCTTCCTGCACCAAATTGCCTGCTCCAGTG 909 Query 56641 CATCCAGCACGAATGTCGTTTCCATAGACGATGAG--ACCCGCCACCCCACGATGTATCC 56698 |||||||||| | | ||||||| ||| ||| |||||||| || ||||| || | Sbjct 908 CATCCAGCACCAGCGGAGTTTCCAGCGAC--TGACTCACCCGCCAACCTACGATATAACG 851 Query 56699 GGCAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGT 56758 | | | ||||| || | ||| || |||||||| || || ||| ||| || ||||| Sbjct 850 TGAATAGACATCGATAACAAATGCGACATAGACAAAACCTGACCAGGTGGGGATATAAGT 791 Query 56759 AAAATCAGCCACCCACAGCTGGTCAGGTC 56787 | |||||||||||| ||||| | ||||| Sbjct 790 TATATCAGCCACCCAAAGCTGATTAGGTC 762 Score = 84.2 bits (92), Expect = 9e-12 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 57180 GGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGC 57239 ||||||||| |||||||| |||||||||||| || |||| ||| | || || || | Sbjct 363 GGCGGTCGAGCTCCGCCTGCGCAAAATAAGCAGAGGCCTTGCGTAATATCTCATTGGCAC 304 Query 57240 GGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTC 57288 |||||| |||| |||| || |||||||| |||| ||| | | ||| || Sbjct 303 GGCGCAATTCAAGATTCTCGCGTTCCAGGGCTTTGAGATGTTCACGCTC 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199829018743992