Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq11950 107 1e-18 >seq11950 Length=2906 Score = 107 bits (118), Expect = 1e-18 Identities = 169/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| | || | || |||||||| || ||||||||||| || || Sbjct 1125 AATCTGCATTCCACCTCTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTT 1066 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCC---AATTGCTTTCCACTAAATATTAAACGTTG 33249 ||| || ||||| | | || ||||| | |||||| ||| || || ||||| || Sbjct 1065 GTAGTCCGACAAGGT---TCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTG 1009 Query 33250 CTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTC 33309 |||||| | ||| || ||||| || || |||| || || ||| ||| ||||| Sbjct 1008 CTGGTCTGGGGGAATTCCTTCCTTGTCTTGAATCTTAGTCTTCACATTTTCAATGGTGTC 949 Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || | ||| || ||||| || || || || ||||||||||| || || || ||||| Sbjct 948 GGATGGCTCAACCTCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCAT 889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317656297401168