Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq11950 159 8e-34 >seq11950 Length=2906 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| |||||||| || ||||| | |||||||| || ||||||||||| ||| Sbjct 662 ATTCCACCTCGGAGCCTAAGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCA 603 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||| ||||| || || ||||| ||||| || | ||| ||||| || Sbjct 602 GACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGG 543 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || || |||||||| || || || || || | ||| || | || Sbjct 542 GGAATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCA 483 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||||||||| || || || ||||| || || || || || || |||||| Sbjct 482 ACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 432 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| |||||||| || ||||| | || ||||| ||||||||||| ||||| Sbjct 206 ATTCCACCTCGAAGCCTAAGGACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCG 147 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| ||||||||||||||||| || || | ||| || || || Sbjct 146 GAAAGAGTACGACCATCTTCCAGTTGTTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGG 87 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || || ||||| || || ||||| || | ||||| || || Sbjct 86 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATCGTATCAGATGGCTCG 27 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || || || ||||| ||||| Sbjct 26 ACCTCGAGAGTGATGGTCTTTCCAGT 1 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | |||||||| || ||||| | || ||||| || ||||| || || || Sbjct 434 ATTCCTCCACGAAGCCTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCG 375 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| ||||| ||||| ||||| || || | ||||||||| || Sbjct 374 GAGAGAGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGG 315 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||||||||| ||||| || || || || || | ||| || | || Sbjct 314 GGGATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCA 255 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||||||||| || || || ||||| || || || || || || |||||| Sbjct 254 ACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 204 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| || || || | ||| || || ||||| ||||| Sbjct 1313 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGTTGCTTTCCG 1254 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| ||||| || || ||||||||||| ||||| ||||| | || Sbjct 1253 GCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGTCTTG 1194 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || || || || ||||| || ||||| || || ||||| || || Sbjct 1193 ACATTTTCAATAGTGTCAGATGGCTCAACCTCAAGAGTAATGGTTTTGCCAGTGAGGGTC 1134 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 1133 TTGACGAAAATCTGCATT 1116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147140652492128