Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq145590 111 1e-19 >seq145590 Length=2730 Score = 111 bits (122), Expect = 1e-19 Identities = 265/392 (68%), Gaps = 9/392 (2%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 |||||||| || ||||| ||| | || | |||| || || || | |||| || | Sbjct 2017 CCCGTGGATCCAAATCCACCTTCTCCCCGCGCCGTTTCTTCAAGTTTCTCCACTTCCTTG 2076 Query 5564 ACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACC 5623 | || || || | | ||| || || |||||||| || || || |||||||| ||| Sbjct 2077 ATCTCCGGATACAGAATGGCCTCACAAATGAGCTGCGCAATGCGATCCCCCGTCTTGACC 2136 Query 5624 TCGAAA-TCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGC 5682 ||||| || ||| || | ||| |||| | || |||| | || || ||||| || Sbjct 2137 TCGAATGTCTCCGTGCCC-ATGTTAAACAAGATGACCCCCAGGGGACCTCGATAGTCTGC 2195 Query 5683 GTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGC 5742 || | ||| ||||| || |||||||| | ||||| || || |||||||| ||||| Sbjct 2196 ATCCACCACACCCGCACCAACGTCGATCCCCTTCTTGAGAGCAAGTCCGGAGCGAGGAGC 2255 Query 5743 CACGCGGCCGTAGCACCCATCGGGAAGCTG-TATCTGCAGGTCCGTGAACACCACTCGCC 5801 |||||||||||| || | ||||| ||| || ||||||||| || | || Sbjct 2256 GACGCGGCCGTAGGTACCGTGGGGAA-CTGCGATGGAAAGGTCCGTGGGGACGAGGGCCC 2314 Query 5802 GACCGCCCGCAGGG-ACGATGCA---GTCGCAAGCGCTGCAGAGGTCGTACCCGGCCGCC 5857 |||| ||| | ||| ||||| | ||| ||| | |||||||| || || | Sbjct 2315 GACC-CCCTCGGGGCTCGATGGACACGTCCTTGGCGGCGTAGAGGTCGAGGCCAGCGGAG 2373 Query 5858 CGCGGGGACCCCCTGGTGGGGAGCGTGGCGTT 5889 | ||||| |||| | ||||||| ||||| || Sbjct 2374 AGAGGGGAACCCCGGCTGGGGAGGGTGGCATT 2405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428541680422592