Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq157813 114 3e-21 seq262960 107 5e-19 >seq157813 Length=1168 Score = 114 bits (126), Expect = 3e-21 Identities = 243/360 (68%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 33058 CCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCC 33117 ||||||| | |||| ||| ||||| | | ||||||| | ||||||||||| || || Sbjct 564 CCATTCGGTTTTCAAACTTCTGAATACTCTTTCCATTAGTGCATTATCCCAGCAATTACC 505 Query 33118 GCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCT 33177 |||| |||||| |||||| | || |||| ||||| | || |||| || | | ||| Sbjct 504 ACGCCTGCTCATGCTCTGTTTAATGCGGTAGCGCCATAGCAATTGCCTAAATTTCAAGCT 445 Query 33178 CGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCACGGGTTTC 33237 |||||| |||||||| || || || ||||| ||||| | ||| || || | || Sbjct 444 CGTATATTGACTGCCTTGGTCTGAATGAAACATTACCCCTCTGGGTTTTCCCCTATGTTG 385 Query 33238 CCATGCCATTTCCAGCGCTTTCATGGTGAGC-CTGCTGTCCGGCGAGAACGACATGGCCC 33296 | ||| |||| || || || || ||| ||| ||| || | || || | | Sbjct 384 ATAAGCCTTTTCAAGGGCGTTGATTACCAGCGATGC-GTCTGGGTGCATTGATATCGATC 326 Query 33297 AGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTAC 33356 | || | | | |||| | | ||| | || |||||| | ||| |||||| ||| Sbjct 325 AACCGATAACTCGCCGTGCGTATAAGTCAATAATAACGGCTAAGTAGATCCAGCGACTAC 266 Query 33357 CCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACT 33416 ||| |||||||||||| | ||| || ||||| || || || ||||| || | |||| Sbjct 265 CCGCCCAGATATAGGTTATATCGCCACACCAAACGGAGTTAGGGTCGGTGACAGTAAACT 206 >seq262960 Length=559 Score = 107 bits (118), Expect = 5e-19 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 33058 CCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCC 33117 ||||||| | |||| ||| ||||| | | ||||||||| ||||||||||| || || Sbjct 397 CCATTCGGTTTTCAAACTTCTGAATACTCTTTCCATTGGTGCATTATCCCAGCAATTACC 456 Query 33118 GCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCT 33177 |||| |||||| |||||| | || |||| ||||| || || |||| || | ||| Sbjct 457 ACGCCTGCTCATGCTCTGTTTAATGCGGTAGCGCCATAACAATTGCCTAAATCTCAAGCT 516 Query 33178 CGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCC 33216 |||||| |||||||| ||||| || ||||| ||||| Sbjct 517 CGTATATTGACTGCCTTGATCTGAATGAAACATTACCCC 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124388216250960