Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq287714 86.0 7e-12 >seq287714 Length=1605 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTG 6899 ||||||||||||||| || | |||||||| ||| || ||| || | |||| | |||| Sbjct 1328 ATAAATATGAGCATCGCCAAACGTATGAACAAAATCGCCTACTTCTAAATCACAAACTTG 1269 Query 6900 AGCAATTAAAT-ATGTTAATAA-TGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 || | | || ||| ||| || |||||||| || | |||||| || |||||||| Sbjct 1268 CGC--TAACATCATGGTAAGAAGCGCATAAGAGGCAATATTAAACGGCACACCTAAGAAG 1211 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAA 6992 ||||| || || | ||| ||| ||||||||| || Sbjct 1210 ATATCCGCAGAACGTTGGTAAAGTTGACAAGACAA 1176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593722272585600