Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1080 100 1e-16 seq35040 95.1 6e-15 >seq1080 Length=3206 Score = 100 bits (110), Expect = 1e-16 Identities = 78/93 (84%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| ||||||||| | |||||||| | |||||||||| |||||||||||||||| Sbjct 1259 AATAAATAAAAAA--ATATTGGCCCGTAGGGGGATCGAACCCGTGACCTTCGCGTTATTA 1316 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||| ||||||||| ||||| Sbjct 1317 GCACGACGCTCTAACCAGCTGAGCTAACGGGCC 1349 >seq35040 Length=575 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| ||||| | |||||||| | |||||||||| |||||||||||||||||||| Sbjct 348 AATTAAAAAAAACATTGGCCCGTAGGGGGATCGAACCCGTGACCTTCGCGTTATTAGCAC 289 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||| ||||| Sbjct 288 GACGCTCTAACCAGCTGAGCTAACGGGCC 260 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260571402742816