Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq18405 167 4e-37 seq176494 136 6e-28 >seq18405 Length=6587 Score = 167 bits (184), Expect = 4e-37 Identities = 183/241 (76%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||| || || ||||| || |||||||| || || |||||||| || | Sbjct 6203 CGCCAAGCGTCATCGAAAGGTC-CTTCGTGACAACATCCAGGGTATTACCAAGCCCGCCA 6261 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | ||||| || ||||| ||||| || ||||||||| ||||||| | ||||||| |||| Sbjct 6262 TTCGTCGCCTTGCTCGCCGTGGAGGGGTCAAGCGTATCTCTGGGCTCATCTATGAGGAGA 6321 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| ||||||| ||| ||| |||| ||| || || ||| || | Sbjct 6322 CCCGAGGTGTGCTCAAGGTCTTCCTAGAGAACGTCATCCGTGACGCCGTCACCTACACTG 6381 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| ||||| ||||||| | ||||| || | |||||||||| Sbjct 6382 AGCACGCCAAGAGGAAGACCGTCACTGCCATGGACGTTGTCTACGCCCTTAAACGTCAAG 6441 Query 16671 G 16671 | Sbjct 6442 G 6442 >seq176494 Length=1598 Score = 136 bits (150), Expect = 6e-28 Identities = 191/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||| | ||| || || |||||||| || || || ||||| || || Sbjct 478 CGCCAAGCGGCATCGAAAGGTTCTCCGCGACAACATCCAGGGTATTACGAAGCCTGCCAT 419 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||||||||| || |||||||| |||| ||| | |||| || || | Sbjct 418 TCGTCGACTGGCTCGTCGTGGAGGGGTCAAGCGGATCTCCGGACTTATCTACGAGGAAAC 359 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | || | || || | | ||| |||| ||||| | |||||||| Sbjct 358 TCGAGGTGTCCTTAAAGTATTTCTAGAAAACGTCATCCGGGATGCCGTAACATATACCGA 299 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || |||||||| |||| ||||| | ||||| ||||| Sbjct 298 GCACGCCAAGAGGAAGACCGTGACTGCCATGGATGTCGTTTATGCTCTCAAACGACAAGG 239 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || |||||| | ||| Sbjct 238 AAAAACGCTCTACGGATTTGGAGGATAA 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78811316370888