Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq170146 122 1e-22 seq236343 116 6e-21 >seq170146 Length=2682 Score = 122 bits (134), Expect = 1e-22 Identities = 234/345 (68%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 193847 CACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCAT 193906 ||| || || | || ||||| || || | | ||||| ||||||| |||||||| | Sbjct 61 CACTCCGTTCTACCCGCGCTCACCGTACGCTTGTGCAAAATTGTATGCCTATTGGATTAC 120 Query 193907 CAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGA 193966 || ||||| ||| | |||||||| | || | ||| ||| | || ||||| || Sbjct 121 GGTTAACTATCGAGAGGCCTATGGATTGTATGCGTGCAATGGGATTTTGTTTAATCATGA 180 Query 193967 ATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGAT 194026 ||||| | | ||||||||||||||||| || |||||||| | ||| || | || | Sbjct 181 GTCTCCTCGGCGTGGTGAGACATTTGTAACGCGCAAGATTACCCGAGGGTTGGCAAATAC 240 Query 194027 CTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGG 194086 |||| || | | || | | || | || ||| | |||| | | || ||||| Sbjct 241 CTCTCAAGGGCTTGATAAATGTTTGTACTTAGGGAATATGGATGCGTTGCGAGACTGGGG 300 Query 194087 ACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGA 194146 ||||| ||||||||||| | | |||| | ||| | || ||| || ||| | || Sbjct 301 GCACGCGAAGGATTATGTCCGAATGCAGTGGATGATGCTTCAGCAGAATACACCTGTGGA 360 Query 194147 TTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGAGACTTTGT 194191 ||| || || ||||| || |||| |||||||| ||||| || || Sbjct 361 TTACGTCATCGCTACCGGCAAACAATATTCTGTGAGAGATTTCGT 405 >seq236343 Length=1092 Score = 116 bits (128), Expect = 6e-21 Identities = 238/352 (68%), Gaps = 4/352 (1%) Strand=Plus/Plus Query 193842 GAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGG 193901 |||| || || ||| |||||||||||||||| | || || || | || | |||||| Sbjct 111 GAAAATACGCCTTTTTATCCACGCTCTCCTTACGCAGTTGCGAAACTATACGCGTATTGG 170 Query 193902 ATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAAT 193961 || | ||||||||||| || ||||| || || || ||| ||| | || ||| Sbjct 171 ATTACGGTAAATTATCGTGAATCCTATGGTTTATTTGCCTGTAATGGAATTTTATTTAAT 230 Query 193962 CACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCT 194021 ||||| ||||| |||||||| || || |||||||| ||||| |||| | || ||| | Sbjct 231 CACGAGTCTCCTAGAAGAGGGGAAACGTTTGTAACGCGTAAAGTTACTCGCGGATTAGCG 290 Query 194022 AAGATCTCTGTTGGATTACAGAAGAT--TCTTTATCTTGGTAATCTTAATGCTAAGAGGG 194079 | || | ||| | ||| ||| |||||| | |||||| | | |||| | | Sbjct 291 CAAATAGCGCACGGAGT--AGATGATTGTCTTTACTTGGGTAATTTAAGTGCTTTACGTG 348 Query 194080 ATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAAC 194139 | ||||| ||||| || ||||| || || | ||||| ||| | ||||| | | Sbjct 349 ACTGGGGGCACGCGAAAGATTACGTAAAAATGCAATGGTTGATGCTACAACAAGCCATCC 408 Query 194140 CCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGAGACTTTGT 194191 | || || || || || ||||| ||| || || || ||||| ||||| Sbjct 409 CAGAAGACTACGTTATAGCTACTGGTAGGCAAATGTCCGTGAGAGATTTTGT 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 804641783104960