Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq28030 95.1 1e-14 seq285389 89.7 5e-13 >seq28030 Length=5412 Score = 95.1 bits (104), Expect = 1e-14 Identities = 319/495 (64%), Gaps = 4/495 (1%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| || || |||||||| | || | ||||| |||||||| | || | Sbjct 1191 TTTAGAAGTCGGCATCTAACGTAAATTTACGTTCTTCGGGCTTTGACATCACACCGGCCT 1250 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| || | ||| | || || || || ||||||||||| |||| || ||| || Sbjct 1251 TTTGATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTTT 1310 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATA 21305 ||||||| ||||| || |||||| || | || || || | || ||| | | Sbjct 1311 CCATAAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCAGTCAAGCTCTACAAGGA 1370 Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 || ||| || ||||||| || || || ||| | ||||||||||| |||| || | Sbjct 1371 GTCGATCCGCGACAAATTTGATGTACTGCACCATGGAATCACAATTCATTCCGAGCATTC 1430 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425 || |||||||| | ||| | || | || || | ||||| || || || | Sbjct 1431 GCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACGATTT 1490 Query 21426 TTATTATCCTAGATGTACTAGGGGGATACAA--TAATTGTTTAAACATCAAACATGCAAA 21483 | |||| | | || ||| || | | ||| | ||||| | || ||||| Sbjct 1491 CCGTGATCC--GCTCCACAGAGGGCTTATTAGCGAGATGTCTGAACATGAGGCAGGCAAA 1548 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 || || | ||||| || | | || | ||| ||||| || || | || ||||| Sbjct 1549 GTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAGGCAT 1608 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603 | ||| | ||| || | ||| || || || ||||| | || || |||||||| || || Sbjct 1609 GAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCCCTTC 1668 Query 21604 AACGGCAGCAAATGC 21618 ||||| ||||| || Sbjct 1669 CACGGCCGCAAAAGC 1683 >seq285389 Length=790 Score = 89.7 bits (98), Expect = 5e-13 Identities = 179/262 (68%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||||||||| || || ||||||| | | |||| | ||| ||| Sbjct 533 TTAAAAATCAGCATCGAAGCTGATGTTATTATCTCCACTGTTTG---CTACTCCAGCTTT 589 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||| || || ||||| ||||| || |||||||| || |||| | |||||| || Sbjct 590 TTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAGTGATATCATATC 649 Query 21247 CATAAAATCAAATGGATT-TTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATA 21305 |||||| ||||| ||||| | | ||| || | |||| | || | | || ||| | Sbjct 650 CATAAAGTCAAAAGGATTAGTAACATTGAATTCTTTT-TCGCATTCTAACTCAACTAAGA 708 Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 |||||| | ||| || |||| |||||| ||| | || |||||||||| || || Sbjct 709 GTCTATCAGTTACGAACTCTAAATATTGTGTCATCAGATCTGAATTCATACCAATTAAAC 768 Query 21366 TTACAGGAAGAGCTTTTGTCAA 21387 |||| || |||| || ||| || Sbjct 769 TTACCGGTAGAGATTCTGTTAA 790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529981861483840