Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq28030 217 2e-51 seq285389 91.5 2e-13 seq244135 84.2 3e-11 >seq28030 Length=5412 Score = 217 bits (240), Expect = 2e-51 Identities = 612/933 (66%), Gaps = 20/933 (2%) Strand=Plus/Plus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 33013 |||| ||||| ||||||| | ||| | | ||||| | ||||| || || | Sbjct 1191 TTTAGAAGTCGGCATCTAACGTAAATTTACGTTCTTCGGGCTTTGACATCACACCGGCCT 1250 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 |||| ||||| ||||| || || || || || || ||||| |||| || ||||||| Sbjct 1251 TTTGATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTTT 1310 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133 |||| || ||||| || || | ||| || || || | | | || || | Sbjct 1311 CCATAAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCAGTCAAGCTCTACAAGGA 1370 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATT---TCACAATTCATTCCTATAA 33190 || ||||||||| |||| || || | || ||| |||||||||||||| | | Sbjct 1371 GTCGATCCGCGACAAATTTGATGTAC---TGCACCATGGAATCACAATTCATTCCGAGCA 1427 Query 33191 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 | || ||||||||| | || || || || || || | || |||||| | | Sbjct 1428 TTCGCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACGA 1487 Query 33251 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 33310 | | | || || || || | |||| | ||||| | || || | Sbjct 1488 TTTCCGTGATCCGCTCCACAGAGGGCTTATTAGCGAGATGTCTGAACATGAGGCAGGCAA 1547 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 | || ||| || || ||||| | | ||| |||||||| || |||||||| || |||| Sbjct 1548 AGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAGGCA 1607 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTT 33430 | || |||||||| || ||||| || |||||||| || || || || ||||| || |||| Sbjct 1608 TGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCCCTT 1667 Query 33431 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACT 33487 | || || ||||| || || | || ||||||| | | | | | | || |||||| Sbjct 1668 CCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCGTCCACT 1727 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547 ||||||||||| | |||||||||| | | ||| | | || | ||| |||||||| Sbjct 1728 TTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAAGTTGTCCAGGGCGTTAAAGAGGC 1787 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGA 33605 ||||| | |||| || | ||| || || || | || || || |||||| || Sbjct 1788 GACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAATGAGTAATGAGTA--CATTTCAGA 1845 Query 33606 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 33665 ||||||||||| ||||| | |||||| || ||||| |||| || || |||| || || Sbjct 1846 GTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTCAGTAACTTGGAC 1905 Query 33666 TTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33725 || | || || || | | || ||||| || ||||||||| || || ||||| Sbjct 1906 CTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGATTCCGTCAGATGCAGCGAAAAA 1965 Query 33726 CGCCAATACATGTTTTATAAAATA---TTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 33782 || | ||||| ||| ||||| | |||||| | | | |||||| Sbjct 1966 GGCAAGGACATGAGATATGAAATAACGCTCTTCGTCATTCAGACGCTCTTCCCAATCTAG 2025 Query 33783 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 | |||| || | ||| || ||||| || ||||| || || | || ||||| || Sbjct 2026 GGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGCTGGCAACGGCTTTTTTGTA 2085 Query 33843 CATGTTCCAGATGTCATAATATTGGATTGGGAA 33875 ||||||||||||||| ||||||| |||||| Sbjct 2086 CATGTTCCAGATGTCTGGGTATTGGA-TGGGAA 2117 >seq285389 Length=790 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 33004 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33063 ||||| |||||||||||| ||| | ||||| || ||||| ||||| |||| | | Sbjct 579 ACTCCAGCTTTTTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAGT 638 Query 33064 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 33123 ||||| | ||||| || ||||| ||||| |||||||| | ||||| || | || Sbjct 639 GATATCATATCCATAAAGTCAAAAGGATTAGTAACATTGAATTCTTTTTCGCATTCTAAC 698 Query 33124 TCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33183 ||| | | |||||| | ||||| |||| |||| | |||||| || ||||||| Sbjct 699 TCAACTAAGAGTCTATCAGTTACGAACTCTAAATATTGTGTCATCAGATCTGAATTCATA 758 Query 33184 CCTAT 33188 || || Sbjct 759 CCAAT 763 >seq244135 Length=507 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 62342 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62401 ||||||||| || | ||| | || || ||||||||| ||||||||| || | | || Sbjct 265 AAATTCTCCTGAAAGTACACGACGGGTATAAATATTAGAGGTATACGGCTCAAAAGCTTC 206 Query 62402 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 ||||||||| ||||| || | || || || || ||||||||||| || ||||| Sbjct 205 ATTATTTCCTAAAATCTGTGATGTAGAAGCTGTAGGCATAGGTGCTACTAATAA 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620699793386560