Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq11950 118 1e-21 >seq11950 Length=2906 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || || | |||||||| | ||||| | ||| | || | Sbjct 660 AATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTC 719 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| ||| | ||||| |||||| ||||| || || || || || ||||| Sbjct 720 AGACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCA 779 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||||| || ||||| || || || || | | | | | | ||||||||| Sbjct 780 GCAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCCGACTATAA 839 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| || |||||| | || |||| |||||| | |||||||||| Sbjct 840 CATTCAAAAGGAGTCTACTCTTCACTTGGTTCTGAGATTGAGAGGAGGAA 889 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || ||||||| ||| | ||||| | || | || | Sbjct 204 AATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTC 263 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| ||| | ||||| ||||| || |||||||| || || || ||||| Sbjct 264 AGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCCCCAGATCA 323 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | ||||| | | ||| || ||||| ||||||| | | || ||| || || Sbjct 324 ACAGCGTCTCATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACTCTCTCCGATTACAA 383 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| ||||| || | ||||| || || || ||| | ||||||| Sbjct 384 CATTCAAAAGGAATCCACCCTTCATCTCGTTCTTAGGCTTCGTGGAGGAA 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476935529659520