Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq61270 152 1e-31 seq182767 127 5e-24 >seq61270 Length=8000 Score = 152 bits (168), Expect = 1e-31 Identities = 405/608 (67%), Gaps = 12/608 (2%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACAT--ATTGGAAGGGAATTGTCGAAGAACTTCTGT 111372 ||||| || |||||||||||| | | ||| | || || | ||||| | | | Sbjct 7022 TTTCCTCTCCTCACAACAAAGAAAGTCTTCATTCGTGGG--ATCGCAGAAGAGTTGTTTT 7079 Query 111373 GGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCA-AAAAATGTAAAAATTTGG 111431 |||| ||||| || |||||||| ||||| ||| || | |||||||| || ||| Sbjct 7080 GGTTCATTCGGGGCTCAACAAATGCCAATGAG-TTGAAGGAGAAAAATGTGCGCATCTGG 7138 Query 111432 GATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACG--AAGAAG 111489 || || ||| || || | | ||| || || | || ||| | | |||| |||||| Sbjct 7139 GACGGGAATTCCTCTCGGGCATATCTGGACTCCATGGG-CTT-TAAAGAACGGGAAGAAG 7196 Query 111490 GTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCA 111549 | ||| | || || || || || ||||||||| | |||||||| || || || | |||| Sbjct 7197 GAGATTTAGGGCCGGTCTATGGGTTTCAATGGAGGCACTTTGGCGCGGAGTATGATACCA 7256 Query 111550 TGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTA 111609 |||| | || | | |||| ||||| | ||| || ||||| |||| Sbjct 7257 TGCATGCAGACTACGCTGGGAAGGGTGTGGATCAGCTTGGGAAGGTTATTGAGACCATTA 7316 Query 111610 AGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAA 111669 ||| || || |||||| || | ||| |||| |||||| | | | | | Sbjct 7317 AGAGTAATCCGGACGATCGTCGTATGGTGATGTGTGCTTGGAACGCGAGAGATCTTCATT 7376 Query 111670 AAATGGCACTTCCACCATGTCA-TCTTATGTGCCAGTTTTATGTACACGACGGGATGCTT 111728 |||||| | || || || || | | ||| | |||| ||||| ||||| |||| Sbjct 7377 TAATGGCCTTGCCTCCGTGCCACTGTCTTGTAC-AGTTCTATGTGGCGAACGGGGAGCTT 7435 Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 || ||||||||||||||||| ||||||||||| ||||||||||| || ||||| ||||| Sbjct 7436 TCTTGCCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTACCATTTAACATTGCC 7495 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTC 111848 || || || || || || | | || || ||| | || ||| || || || || || Sbjct 7496 AGCTATGCCCTTCTAACCATCATGATGGCCCATGTGACGGGTCTTAAGCCAGGGGACTTT 7555 Query 111849 ATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAG 111908 || || | || ||||| ||||| || | |||||| || |||| || | ||| Sbjct 7556 ATACATTCCCTGGGGGATGCCCATGTCTATAATAACCACGTTAATGCCCTGGAGGAGCAG 7615 Query 111909 TTGAAGCG 111916 |||||||| Sbjct 7616 TTGAAGCG 7623 >seq182767 Length=2084 Score = 127 bits (140), Expect = 5e-24 Identities = 287/428 (67%), Gaps = 4/428 (1%) Strand=Plus/Plus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 ||||||||||| | ||||||||||||||||| || || ||||| ||||| || ||| Sbjct 1558 CGCAACTCCCTTCTCTTGGCGCCCATGCCCACGGCCTCCACGGCACAAATCCTGGGGAAC 1617 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 |||||| || |||| | | || ||| | || || || || || || || || || Sbjct 1618 AACGAGGGCATCGAGGCCTACACCTCCAACATCTACTCCCGACGTGTCCTCTCTGGGGAG 1677 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 || | ||| || || | | || || |||||| | || | | || |||| ||| Sbjct 1678 TTCCAGGTCGTGAACCATCATCTTCTCCGGGATCTCACGGAACTTGATCTCTGGGATGAG 1737 Query 364912 AGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCA 364971 ||||||| | |||| || ||| ||||| || || || || || | | |||| Sbjct 1738 GACATGAAGCAAAATATAATTGCCAACAATGGATCCGTTCAAGGGATCCCGGAAATTCCT 1797 Query 364972 GAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGAT 365031 || || | ||| | | || || ||||| ||||| || || | || || || | Sbjct 1798 GATGACATCAAGGCGCTCTATAAGACCGTCTGGGAGATCTCACAGAAGACCATCCTTCAA 1857 Query 365032 ATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT--CATGA 365089 ||||| || ||||| || || || || |||||||||| || | | |||| ||| Sbjct 1858 ATGGCTGCAGATCGAGGGGCGTTCATTGATCAGAGCCAG-AGTCTCA-ATATTCACATCG 1915 Query 365090 CTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTA 365149 | ||||| | || | ||||| || |||||||| ||||| |||||||| || || | Sbjct 1916 CACAGCCCAACTATGGAAAGCTCACCTCCATGCACTTCTATGGGTGGAAGCTTGGACTCA 1975 Query 365150 AGACAGGT 365157 | |||||| Sbjct 1976 AAACAGGT 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1298533938497712