Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq11950 125 6e-24 seq28030 104 2e-17 >seq11950 Length=2906 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || | |||||||| | || || | ||||| |||||| Sbjct 660 AATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTC 719 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | ||||| |||||| ||||| || || || || || ||||| Sbjct 720 AGACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCA 779 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || |||| || |||||||| || || || | | | | | ||| ||||| Sbjct 780 GCAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCCGACTATAA 839 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||| || ||||| |||| || || | ||||||||||||||| Sbjct 840 CATTCAAAAGGAGTCTACTCTTCACTTGGTTCTGAGATTGAGAGGAGGA 888 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || ||||||| ||| | || || | || || |||||| Sbjct 204 AATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTC 263 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | ||||| ||||| || |||||||| || || || ||||| Sbjct 264 AGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCCCCAGATCA 323 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | || || | | ||| |||||||| ||||||| | | | || |||||| || Sbjct 324 ACAGCGTCTCATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACTCTCTCCGATTACAA 383 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||||||||| ||||| || ||||| Sbjct 384 CATTCAAAAGGAATCCACCCTTCAT 408 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| | || || || | || || | || || ||| | Sbjct 888 AATGCAGATCTTTGTTAAAACTCTTACCGGGAAGACCATCACTCTTGAGGTTGAGCCATC 947 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||| || | || || |||||| ||||| ||||| || || || || || Sbjct 948 CGACACCATTGAAAATGTGAAGACTAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCA 1007 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || ||||||||||| || |||| | ||| | | || || || Sbjct 1008 GCAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACCTTGTCGGACTACAA 1067 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||| || || | |||||||| Sbjct 1068 CATTCAAAAAGAGTCCACTTTGCATTTAGT 1097 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | ||||| ||| | ||||| | || || ||| ||| Sbjct 1116 AATGCAGATTTTCGTCAAGACCCTCACTGGCAAAACCATTACTCTTGAGGTTGAG-CCAT 1174 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | ||||| || || | ||||| ||||| ||||||||||| || || || |||| Sbjct 1175 CTGACACTATTGAAAATGTCAAGACCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATC 1234 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | ||| | |||| | || ||| ||||||||||| |||| | | | || ||| || | Sbjct 1235 AGCAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACCCTCTCCGACTACA 1294 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||| || || ||||| || |||| || || Sbjct 1295 ACATCCAGAAGGAATCCACCCTTCACTTGGT 1325 >seq28030 Length=5412 Score = 104 bits (114), Expect = 2e-17 Identities = 239/352 (68%), Gaps = 16/352 (5%) Strand=Plus/Plus Query 104586 CCGTTTG-TATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATAT 104644 || |||| ||||| || ||| || ||||| || || ||||| || ||||| ||||||| Sbjct 1248 CCTTTTGATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATAT 1307 Query 104645 TATTCATAAATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCA 104704 | | |||||| || || || || | | || | || | || ||||||| | | Sbjct 1308 TTTCCATAAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCAGTCAAGCTCTACAA 1367 Query 104705 ACAGTCGATCCGCCACAAATTCGATGTACTCGCA-CATAGAATGTGCATTCATGCCCAGC 104763 ||||||||||| ||||||| |||||||| ||| ||| |||| |||||| || ||| Sbjct 1368 GGAGTCGATCCGCGACAAATTTGATGTACT-GCACCATGGAATCACAATTCATTCCGAGC 1426 Query 104764 ATTGCGACGGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATGTCCACGGCTTCCTTAAAC 104823 ||| ||||| | ||| | || | || || ||||||| | ||||| | || ||| Sbjct 1427 ATTCGCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCAT-CTCGAAC 1485 Query 104824 ATGTTCAGCACCTTGCT-TTCAGAAAGCTTGTCCTCTTTGGCAATATATTTGTTGTAATA 104882 ||| | ||| |||| |||| || || | || | || || | Sbjct 1486 GATTTCCGTGATCCGCTCCACAGAGGGCTT------ATTAGCGAGATGTCTG----AACA 1535 Query 104883 -GAGGCAGGCAAAGTCTGTGTGCAATCCTTCATCTCTAGAAATAAGTTCGTT 104933 ||||||||||||||||||||| | ||||| || | |||||| |||||||| Sbjct 1536 TGAGGCAGGCAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTT 1587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428423696895480