Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq11950 125 7e-24 seq78081 114 1e-20 seq271769 100 3e-16 seq182767 89.7 5e-13 >seq11950 Length=2906 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | |||||| || || || | ||| || ||||| || |||||||| ||| Sbjct 1343 CCCCCACGAAGACGCAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 1284 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || ||||| || ||| |||| ||||||||||| || || || Sbjct 1283 AGGGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 1224 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||| || ||||| | || | ||| || | | ||| | Sbjct 1223 ATTCCTTCTTTGTCCTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGATGGCTCAACC 1164 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || || || || || |||||||||||||| Sbjct 1163 TCAAGAGTAATGGTTTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1117 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| || |||||||| | || ||||| |||||||||||||| || | Sbjct 1115 CCACCTCTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGAC 1056 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || |||||||| ||| |||| |||||||||||||| || || Sbjct 1055 AAGGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 996 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| || || ||| | | || | || |||| | ||| | Sbjct 995 ATTCCTTCCTTGTCTTGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAACC 936 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| |||||||| || || |||||||| Sbjct 935 TCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCAT 889 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || | ||| | ||| || ||||||||||| || ||||| || |||||| |||| Sbjct 644 AGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAGACAGGGTGCGACCGTCC 585 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 |||||||||||||| ||| | || | ||||||||| || || || ||||| || ||||| Sbjct 584 TCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCT 525 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 || || ||||| | ||| | || || | || ||| | || | || | ||| Sbjct 524 TGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTT 465 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || |||||||| || ||||| || ||||| Sbjct 464 TTGCCAGTTAGAGTCTTGACGAAGATTTGCAT 433 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| | ||| || || || | || ||||||||||||||||| || ||| | Sbjct 887 CCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGAC 828 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||||||||||||||| ||| | || | ||||||||| || || || Sbjct 827 AGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 768 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || || ||||| | ||| | || || | || ||| | Sbjct 767 ATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACT 708 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || || ||||| ||||| Sbjct 707 TCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCAT 661 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || | ||| | ||| || ||||||||||||||||||||| | || || || Sbjct 416 AGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGAGAGAGTACGGCCATCT 357 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || ||||| || || |||| | |||||| || || || |||||||||||||| || Sbjct 356 TCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGGGATTCCTTCTTTATCC 297 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||||| | ||| | || || | || ||| | || | || | ||| Sbjct 296 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTT 237 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || |||||||| || ||||| || ||||| Sbjct 236 TTGCCAGTTAGAGTCTTGACGAAGATTTGCAT 205 >seq78081 Length=4256 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 131047 TTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATT 131106 |||||||||||||| || | ||| || ||||| |||||||| || || |||| Sbjct 2977 TTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGATC 3036 Query 131107 AAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCC 131166 |||||||| || || ||||||||||| || || || |||||| ||| | | || Sbjct 3037 AAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTTCG 3096 Query 131167 ACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 | ||||| | || ||| | |||| ||||| ||||||||| || || || || |||||| Sbjct 3097 ATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGAAA 3156 Query 131227 ATCTGCAT 131234 |||||||| Sbjct 3157 ATCTGCAT 3164 >seq271769 Length=1390 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | ||| || ||||| ||||||||||| ||| ||| Sbjct 850 CCTTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGA 791 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | ||||||||||| || || || |||||||| || || ||| || ||| | | || Sbjct 790 TCAAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTCT 731 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | ||||||| || ||| | || | ||| | ||| || || || || || || |||| Sbjct 730 CGATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 671 Query 131225 AAATCTGCAT 131234 | || ||||| Sbjct 670 AGATTTGCAT 661 >seq182767 Length=2084 Score = 89.7 bits (98), Expect = 5e-13 Identities = 239/362 (66%), Gaps = 9/362 (2%) Strand=Plus/Minus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 || || |||||||| ||||| || | | ||||| || | || | ||| || ||| || Sbjct 1694 TGGTTCACGACCTGGAACTCCCCAGAGAGGACACGTCGGGAGTAGATGTTGGAGGTGTAG 1635 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 | || | |||||| || ||||||||||| || || | || ||||||||| |||| Sbjct 1634 GCCTCGATGCCCTCGTTGTTCCCCAGGATTTGTGCCGTGGAGGCCGTGGGCATGGGCGCC 1575 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | | | || ||||| ||||| || |||| |||| | | | ||||| ||| Sbjct 1574 AAGAGAAGGGAGTTGCGGAGGCCACTCTCGGCGATGGAGGCCTTAATCTTGCCCCAGTCC 1515 Query 145235 CATAGCGAAGTCGGCCTCACG---TCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCG 145291 || || ||| ||| ||||| ||||| | |||||||| | | ||||| ||| || Sbjct 1514 CAGAGATCAGTGGGCGTCACGTCATCCCAGAGATCGTACTGAAGGAGGCCCTTGCTCACG 1455 Query 145292 GGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG---GCGAGCTCGCAACTCGCC 145348 ||| || || | || | | ||| | | | || |||||||| || ||| Sbjct 1454 GGGGAACC-CGAGTAGGTCTCATAGGGACCC--TTCTCGGACGCAAGCTCGCAGCTGGCC 1398 Query 145349 TCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCG 145408 |||| || ||| | ||||| || ||| ||||| |||| | || | ||||||||| Sbjct 1397 TCCAATGCACCGTAGTAAATCGTTTCGAAGATTTGTTTGTTTAAAAGAAGAGCTTCATCG 1338 Query 145409 CT 145410 || Sbjct 1337 CT 1336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470309919421440