Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08]
288,616 sequences; 398,147,594 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq11950 96.9 3e-15
>seq11950
Length=2906
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||||| | ||||| |||| || || || ||||||||||| ||||| ||||||| |
Sbjct 887 CCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGAC 828
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| ||||||| | || ||||| || |||| || ||||| || || ||
Sbjct 827 AGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 768
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||||| ||||| ||| | ||| || | | | ||||| || ||| |
Sbjct 767 ATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACT 708
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| | |||||||| ||||| || || || ||||||||||| ||||||
Sbjct 707 TCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 660
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||||| |||||||| ||||| ||||||||||| | || |||| | | |||
Sbjct 1100 AGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGACAAGGTTCGGCCATCC 1041
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | ||| ||||| || | || | ||||| ||||| || | || || |||||
Sbjct 1040 TCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCT 981
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | |||||| | | | |||||| ||||| || | ||||||||
Sbjct 980 TGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAACCTCAAGAGTGATGGTC 921
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| ||||| || ||||| ||||| |||||||||
Sbjct 920 TTCCCGGTAAGAGTTTTAACAAAGATCTGCATT 888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 403663099921840
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |