Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq59 127 1e-24 seq9043 123 2e-23 seq49684 120 2e-22 seq11950 102 5e-17 seq10111 93.3 3e-14 >seq59 Length=7018 Score = 127 bits (140), Expect = 1e-24 Identities = 75/78 (96%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 3183 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGG 3124 Query 20007 GGTAATATTTAGCCTTAT 20024 ||| |||||||||||||| Sbjct 3123 GGTGATATTTAGCCTTAT 3106 Score = 113 bits (124), Expect = 3e-20 Identities = 76/85 (89%), Gaps = 5/85 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| |||||||||||||||||||||||| || |||||||| Sbjct 5414 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5355 Query 25957 TAATCCTTTCATGCGCGTCACTAAT 25981 |||||| |||||||||||||||||| Sbjct 5354 TAATCCATTCATGCGCGTCACTAAT 5330 >seq9043 Length=3860 Score = 123 bits (136), Expect = 2e-23 Identities = 82/91 (90%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 25906 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAAT 25960 ||||||||||||||| |||||||||||||||||||||||| || |||||| ||||| Sbjct 3859 CCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCTTTAAT 3800 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||||||||||||||||||||||||||| Sbjct 3799 CCATTCATGCGCGTCACTAATTAGATGACGA 3769 >seq49684 Length=8088 Score = 120 bits (132), Expect = 2e-22 Identities = 231/335 (69%), Gaps = 12/335 (4%) Strand=Plus/Minus Query 6169 CCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCT 6228 |||| ||||| || || | ||| ||| || ||||||||||||||||| || ||| Sbjct 4359 CCCTTAACGTGAACCGAAGTGTCCATGACAACTTTTACCGCTACAAAATGCCCCG--TCT 4302 Query 6229 GC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGA 6286 || |||||||| ||||| ||||| ||||| || || ||||| || ||||||| | || Sbjct 4301 GCAGGCCAAGGTGGAGGGCAAGGGCAACGGCATCAAGACCGTGATCCCCAACATGGCGGA 4242 Query 6287 AGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACT 6346 || || | | || || || || |||| ||| | || || || || || || || || Sbjct 4241 CGTGGCCCGGTCCCTGGGGCGGCCGCCCACGTACACCACTAAGTACTTTGGCTGTGAGCT 4182 Query 6347 TGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAA 6406 ||||| || || | || |||| ||||| |||| |||||| |||||| || | Sbjct 4181 GGGCGCACAAACCCTCGCGGACAACAAGAACGACCGCTACATCGTCAACGGACTCCACGA 4122 Query 6407 CTCTGCCAA---GCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCG 6463 | ||||| || ||||| | || || || || || |||||||| || || || Sbjct 4121 C---GCCAATCGACTCCAGGATATCCTGGATGGGTTCATCAAGAAGTTTGTTCTCTG-CG 4066 Query 6464 GGAA-TGCGATAACCCGGAGACCGAGCTTATTGTG 6497 ||| || || ||||| ||||| | || || ||| Sbjct 4065 AGAAGTGTGACAACCCCGAGACGGTCCTCATGGTG 4031 >seq11950 Length=2906 Score = 102 bits (112), Expect = 5e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||| ||| ||||||||||| |||||||| || | | ||| | || || | ||| Sbjct 408 ATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGAGAGAGTACGGCCATCTTCAAGTTG 349 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||||||||||| || || || |||||||| | ||||| |||||||| ||| || || Sbjct 348 CTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGGGATTCCTTCTTTATCCTGGATCTT 289 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| || |||| | || ||| ||||| |||| ||| || ||||| || || Sbjct 288 GGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTTTTGCCAGT 229 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| || ||||| Sbjct 228 TAGAGTCTTGACGAAGATTTGCAT 205 >seq10111 Length=1476 Score = 93.3 bits (102), Expect = 3e-14 Identities = 63/71 (89%), Gaps = 5/71 (7%) Strand=Plus/Plus Query 25926 TCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAA 25980 |||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 1 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCAGTCATGCGCGTCACTAA 60 Query 25981 TTAGATGACGA 25991 ||||||||||| Sbjct 61 TTAGATGACGA 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333769020711896