Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq28030 221 2e-52 seq244135 89.7 6e-13 seq285389 86.0 8e-12 >seq28030 Length=5412 Score = 221 bits (244), Expect = 2e-52 Identities = 408/595 (69%), Gaps = 10/595 (2%) Strand=Plus/Plus Query 32645 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 32704 |||| | ||||| | || || || || ||| || || ||||| | | ||| | ||| Sbjct 1525 ATGTCTGAACATGAGGCAGGCAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTC 1584 Query 32705 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 32764 ||| || |||||||| || ||||| || |||||||| || ||||| || ||||| ||||| Sbjct 1585 GTTAGAGAACGTGAGCCCAGGCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAA 1644 Query 32765 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--- 32821 || || || |||||||| ||||| || |||||||| || || | || ||||||| | Sbjct 1645 GGACCCGGAGAAGAAAATCCCTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGA 1704 Query 32822 ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 | | | | | || ||||||||||||||||| | |||||||||| | | ||| | Sbjct 1705 AGCAGAGGTAGACTGCGTCCACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAA 1764 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941 | || | || |||||||| ||||| | |||| || | ||| || ||||| Sbjct 1765 GTTGTCCAGGGCGTTAAAGAGGCGACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAAT 1824 Query 32942 CA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 | || || || |||||| || ||||||||||| ||||| | ||||| || |||||| Sbjct 1825 GAGTAATGAGTA--CATTTCAGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAG 1882 Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33059 |||| || || |||| || || || | || || || | | || ||||| || Sbjct 1883 CATCGCGCTTCAGTAACTTGGACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACG 1942 Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCT 33116 ||||||||| || || ||||| || | ||||| ||| ||||| | |||||| Sbjct 1943 ATTCCGTCAGATGCAGCGAAAAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCA 2002 Query 33117 GGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 33176 | | | |||||| | |||| || | |||||| ||||| || ||||| Sbjct 2003 TTCAGACGCTCTTCCCAATCTAGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAG 2062 Query 33177 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAA 33231 || || | || ||||| ||||| ||||||||||| | ||||| || |||| Sbjct 2063 AAGCTGGCAACGGCTTTTTTGTACATGTTCCAGATGTCTGGGTATTGGATGGGAA 2117 >seq244135 Length=507 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 62197 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 62256 ||||||||| || | ||| | || || ||||||||| ||||||||| || | || || Sbjct 265 AAATTCTCCTGAAAGTACACGACGGGTATAAATATTAGAGGTATACGGCTCAAAAGCTTC 206 Query 62257 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 ||||||||| ||||| || | || || || || ||||||||||| || ||||| Sbjct 205 ATTATTTCCTAAAATCTGTGATGTAGAAGCTGTAGGCATAGGTGCTACTAATAA 152 >seq285389 Length=790 Score = 86.0 bits (94), Expect = 8e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 32361 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 32420 ||||| |||||||||||| ||| | ||||| || ||||| |||||||||| | | Sbjct 579 ACTCCAGCTTTTTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAGT 638 Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480 ||||| | ||||| || || || ||||| |||||||| | ||||| || | || Sbjct 639 GATATCATATCCATAAAGTCAAAAGGATTAGTAACATTGAATTCTTTTTCGCATTCTAAC 698 Query 32481 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 32540 ||| | | |||||| | || || |||| |||| | |||||| || ||||||| Sbjct 699 TCAACTAAGAGTCTATCAGTTACGAACTCTAAATATTGTGTCATCAGATCTGAATTCATA 758 Query 32541 CCTAT 32545 || || Sbjct 759 CCAAT 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631346045833600