Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq11950 122 8e-23 >seq11950 Length=2906 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || |||||| | || || ||| | |||||| | || || ||| | || Sbjct 432 AATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTC 491 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || ||| | ||| | || | ||| ||||| || || ||||| || || | Sbjct 492 AGACACCATTGAGAACGTCAAGGCTAAGATTCAA-GACAAGGAGGGAATTCCCCCAGATC 550 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | ||||| || ||||| || |||| || | |||||| || ||||| | Sbjct 551 AGCAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCTGATTATA 610 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||| ||||| || || ||| | || || ||||| |||| |||| Sbjct 611 ATATTCAAAAGGAATCTACCCTTCATCTTGTCCTTAGGCTCCGAGGTGGAA 661 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || ||| | ||||| || ||||||| | || || ||| | || Sbjct 888 AATGCAGATCTTTGTTAAAACTCTTACCGGGAAGACCATCACTCTTGAGGTTGAGCCATC 947 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || ||||| | || | ||| ||||| ||||| ||||| || |||| Sbjct 948 CGACACCATTGAAAATGTGAAGACTAAGATTCAA-GACAAGGAAGGAATTCCCCCAGACC 1006 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || || ||||| ||| | || |||| || || || || |||| Sbjct 1007 AGCAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACCTTGTCGGACTACA 1066 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | ||||||||||| ||||| | |||||||| || | || ||||| |||| Sbjct 1067 ACATTCAAAAAGAGTCCACTTTGCATTTAGTTCTTCGTCTCAGAGGTGGAA 1117 Score = 113 bits (124), Expect = 4e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTG 25092 ||||||| |||| || ||| | ||||| || || ||| | ||| || ||| | Sbjct 11 CCATCACTCTCGAGGTCGAGCCATCTGATACGATTGAGAATGTCAAGGCCAAGATCCAAG 70 Query 25093 ACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAG 25152 |||| ||||| || || || ||||| ||||| |||| ||||| || |||||| | |||| Sbjct 71 ACAAGGAAGGAATCCCCCCAGACCAGCAGCGTCTTATCTTTGCTGGAAAACAACTGGAAG 130 Query 25153 ATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAA 25212 ||| ||| ||| | ||| ||||||||||| || ||||| || || ||| | || || | Sbjct 131 ATGGTCGTACTCTTTCCGACTACAATATTCAGAAGGAATCGACCCTTCATCTTGTCCTTA 190 Query 25213 GGCTAAGAGGAGGAA 25227 |||| |||| |||| Sbjct 191 GGCTTCGAGGTGGAA 205 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || ||| |||| || | || || ||| | || Sbjct 1116 AATGCAGATTTTCGTCAAGACCCTCACTGGCAAAACCATTACTCTTGAGGTTGAGCCATC 1175 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||| || | ||| || ||| ||||||||||| ||||| || || || Sbjct 1176 TGACACTATTGAAAATGTCAAGACCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCA 1235 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || ||||| || ||| | || |||| |||||| | ||| ||||| Sbjct 1236 GCAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACCCTCTCCGACTACAA 1295 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || || || || || Sbjct 1296 CATCCAGAAGGAATCCACCCTTCACTTGGTCCT 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431803765510040