Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq28030 230 3e-55 >seq28030 Length=5412 Score = 230 bits (254), Expect = 3e-55 Identities = 615/922 (67%), Gaps = 25/922 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| ||||| ||||| ||||| || ||||| || |||||||| ||||||||||| || Sbjct 1237 CATCACACCGGCCTTTTGATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATC 1296 Query 92850 CAAAGATATCGAATTCACTA-GTGATTGGATTCTTGGCGTTATAATA---CTTTTCACCG 92905 || || || | || | || | || | || | |||| || ||| | | Sbjct 1297 CAGGGAAATATTTTCCATAAAGTCAAAGGGGTTTT--CATTATTGTAGATCTTGGGGCAG 1354 Query 92906 ATCAA-CTCGTACAATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC 92963 |||| ||| ||||| | || ||| || ||||||| |||||||| ||| |||||| Sbjct 1355 -TCAAGCTC-TACAAGGAGTCGATCCGCGACAAATTTGATGTACTGCACCATGGAATCAC 1412 Query 92964 AATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAA 93023 |||||||||| || | || || || ||||| || || | ||| || ||||||| ||| Sbjct 1413 AATTCATTCCGAGCATTCGCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAA 1472 Query 93024 CGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTA-CGACATAATTG 93082 |||| ||| | |||||| | | || || | || || || ||| || || Sbjct 1473 CGGCATCTCGAACGATTTCCGTGA-TCCGCTCCACAGAGGGCTTATTAGCGAGATGTCTG 1531 Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| | ||| |||||||| || || | |||||||| || || || | || || | Sbjct 1532 AACATGAGGCAGGCAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAG 1591 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 || || | || || | ||||| || ||||| ||||| || || |||||||| || Sbjct 1592 AACGTGAGCCCAGGCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCG 1651 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262 || || || || ||||||||||| ||||| || | || || || |||| || || Sbjct 1652 GAGAAGAAAATCCCTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAG 1711 Query 93263 TT--ACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATA-CAAGGTAGTGTT 93319 | ||||| |||| ||| ||||||| | || || || | |||| || || ||| | Sbjct 1712 GTAGACTGC--GTCCACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAAGT-TG 1768 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 || | |||||||| ||| | | || || ||| || || || || || | Sbjct 1769 TCCAGGGCGTTAAAGAGGCGACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAATGAGT 1828 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 | || ||||||||||| || | || || || || | || || || ||||| |||| Sbjct 1829 AATGAGTACATTTCAGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGC 1888 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 ||||| || | || || || | || | ||| |||| || ||||| || || || Sbjct 1889 GCTTCAGTAACTTGGACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGATTCCG 1948 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT---A 93556 || ||||| || ||||| || | | ||| ||| |||| ||| || || || | Sbjct 1949 TCAGATGCAGCGAAAAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCATTCAGA 2008 Query 93557 AGCTTATCCCAATC--GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACG 93614 ||| |||||||| || | ||| || ||||| || |||||||| ||||| || Sbjct 2009 CGCTCTTCCCAATCTAGGGT--ATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGC 2066 Query 93615 ATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAA 93674 || | |||||||||||||| | ||| |||||| | ||||| || |||| | ||||| Sbjct 2067 TGGCAACGGCTTTTTTGTACATGTTCCAGATGTCTGGGTATTGGATGGGAAGGACGACAA 2126 Query 93675 AACGATTAGGGTTATCTTTTAG 93696 | || | ||||| || | ||| Sbjct 2127 AGCGTTGTGGGTTCTCCTGTAG 2148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554851813291840