Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq11950 149 5e-31 seq78081 118 9e-22 seq124498 86.0 5e-12 >seq11950 Length=2906 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | || || || || ||||||||||||| || || | Sbjct 661 ATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTCA 720 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || ||||||||||||||||| ||||| || ||||| Sbjct 721 GACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 780 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| ||||||| |||||| | ||||| || ||| Sbjct 781 CAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCCGACTATAAC 840 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || || | || || ||| || ||||| | ||||| Sbjct 841 ATTCAAAAGGAGTCTACTCTTCACTTGGTTCTGAGATTGAGAGGAGG 887 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||||||| | ||||| || || |||||||||| || || | || Sbjct 889 ATGCAGATCTTTGTTAAAACTCTTACCGGGAAGACCATCACTCTTGAGGTTGAGCCATCC 948 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || |||||||||||||| || ||||| || || || Sbjct 949 GACACCATTGAAAATGTGAAGACTAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCAG 1008 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || ||||| || | |||||| ||| ||| | || || |||||| Sbjct 1009 CAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACCTTGTCGGACTACAAC 1068 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||||||||| ||||| | ||||||||| Sbjct 1069 ATTCAAAAAGAGTCCACTTTGCATTTAGTT 1098 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| |||| || ||||| |||| || || || || || | Sbjct 433 ATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTCA 492 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || ||||||||||||||||| ||||| || ||||| Sbjct 493 GACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 552 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| ||||||| |||||| | || ||||| || Sbjct 553 CAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCTGATTATAAT 612 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 |||||||| ||||| ||| | ||| Sbjct 613 ATTCAAAAGGAATCTACCCTTCAT 636 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| |||| || ||||| |||| || || || || || | Sbjct 205 ATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTCA 264 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || || || || || || || || |||||| Sbjct 265 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCCCCAGATCAA 324 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||||| || || | || ||| ||| || |||||||||||||| Sbjct 325 CAGCGTCTCATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACTCTCTCCGATTACAAC 384 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||||| ||||||||| | ||| | ||| Sbjct 385 ATTCAAAAGGAATCCACCCTTCATCTCGTT 414 Score = 82.4 bits (90), Expect = 6e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || ||||||| || || || | | ||||| | || || |||| Sbjct 1 ACTGGAAAGACCATCACTCTCGAGGTCGAGCCATCTGATACGATTGAGAATGTCAAGGCC 60 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| || || || || || || || |||||||| ||||| || ||| Sbjct 61 AAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAGCAGCGTCTTATCTTTGCTGGAAAA 120 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || ||| || || | ||||| ||||| ||||| || ||||| ||| | ||| Sbjct 121 CAACTGGAAGATGGTCGTACTCTTTCCGACTACAATATTCAGAAGGAATCGACCCTTCAT 180 >seq78081 Length=4256 Score = 118 bits (130), Expect = 9e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| || | || |||||||| | || || || || || || | Sbjct 3164 ATGCAGATTTTCGTTAAGACCCTCACGGGTAAAACCATTACCCTCGAGGTTGAGCCCTCT 3105 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||||| ||||| |||||||| || || || |||||| Sbjct 3104 GATACCATCGAAAATGTTAAGACCAAAATCCAAGATAAGGAGGGAATCCCTCCAGATCAA 3045 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || |||||||| || ||| | |||||| || ||| | || || |||||| Sbjct 3044 CAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGACTACAAC 2985 Query 22399 ATTCAAAAAG 22408 |||||||||| Sbjct 2984 ATTCAAAAAG 2975 >seq124498 Length=1304 Score = 86.0 bits (94), Expect = 5e-12 Identities = 247/373 (66%), Gaps = 28/373 (8%) Strand=Plus/Minus Query 129736 CTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGA 129795 |||||||| |||||||| | ||| | ||| |||||||||||| | | || |||| Sbjct 371 CTGTACTCCACAATTTCCGTGCATAGATTGGAGCATTTAATGGTGCCTAGGTTCTGTTGA 312 Query 129796 TT--ACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTT 129853 || ||||| |||||||||||| ||||| | ||| || ||||| ||||| |||| || Sbjct 311 TTGGACTTTCG--GTTGCAAGCATCCTTGTAGAGCATATAAGGCGTTCCCGTCTCGATTT 254 Query 129854 GCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTTACAAATTTGCC-A 129912 ||| || | |||| | | | | | ||||| || ||||| ||| | Sbjct 253 GCGACTCAATGATGGCCTCCCAGATCTTTTGAGCCGGGACCTGTC----------GCCTA 204 Query 129913 CATTTCTCGTATGCCACATACAGTT---GTTCAAATTCT--GAGCCGTGTAC---GGTGT 129964 | ||| | | ||| ||||| || || ||| ||| || | | | | | || Sbjct 203 TAATTCCCTTCCGCCTCATAC--TTCAAGTACAAGCTCTCAAAGGCCTCTCCCCAGCAGT 146 Query 129965 CGAGCAA--CGGCGAT-TCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTC 130021 | || | | | | ||| |||| |||||||| ||||| | |||||| |||| || | Sbjct 145 CCGCTAATCCAGGGCTCTCATGCGGGCACATCAAGCTCCAAACGCCATCCTCTTCCACAC 86 Query 130022 GTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCT 130081 | ||||| || | ||| || | ||| |||||||| ||||| || | || | |||| Sbjct 85 GCTTCATGAAGAGATCCGGGATCCAGAGGGCGTAGAACAAGTCCCTGGCCCGGTTTTCCT 26 Query 130082 CGGCACCCATGTT 130094 |||| ||| |||| Sbjct 25 CGGCCCCCGTGTT 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418251603612040