Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_008720.1 Length=70153 Score E Sequences producing significant alignments: (Bits) Value seq121188 257 7e-64 seq266624 154 7e-33 seq76541 152 2e-32 seq282583 131 8e-26 >seq121188 Length=15723 Score = 257 bits (284), Expect = 7e-64 Identities = 929/1421 (65%), Gaps = 71/1421 (5%) Strand=Plus/Plus Query 66716 TGGTTTCCACGGGTTCAGGTA-GCCAAGCATTGAAATGGTATCAATACAGTCATCCTTAC 66774 ||||||||| | ||||| | | ||| ||| || |||||||| | ||||||||||||| Sbjct 249 TGGTTTCCATGCGTTCATTTCTGTCAA-CATAGAGATGGTATCGAGGCAGTCATCCTTAC 307 Query 66775 CTTTAAGACCATTGATAGTGGCTAAACGAATTTGCCCCATAAAGAGTGTCATGATTGGGC 66834 |||| | ||||| | || || ||| || || |||| || | || | | | Sbjct 308 CTTTCAAACCATCTTTGGTAGCCAAAGAGATCTGTTCCATGAACAAGCCCAGAACTTGAG 367 Query 66835 TATCTTTCATCTCAGCAGGAAAATACATCTTACCAGCTTTGAACCAGGGAACCACGAGGT 66894 ||||||||||||| || || | ||||| ||||| || || ||||| || || | Sbjct 368 TATCTTTCATCTCCAAGGGGAACTTGATCTTTCCAGCCTTAAATAGAGGAACAACCAGAT 427 Query 66895 TAAACCTTGATAGCTTACTGGTTACAGGATGAATACCCGGTTGGCCTCCACGACTGGATG 66954 |||| || || ||| || | || | |||||||||| || | | |||| | Sbjct 428 TAAATCTACTCAGTTTATCTGTCATGGGTCGGATACCCGGTTTACC-CTTCTGCTGG--G 484 Query 66955 CAAAGTTAAAGAATACATTACGGTTAAGCATTTCCTTC-TGAAGAAGAGAAATAAAACCA 67013 ||| ||| ||| | | | | |||| | |||||| | ||| | | | |||| ||| Sbjct 485 CAAGGTTGAAGTAAATACTCCGGTAATCCATTTCACGCATGATCCATTGGA-TAAACCCA 543 Query 67014 CCTTGCTGTCCAGTAGTTTCTACACCAACTTGTTGTGGTTGGTATTCCTGAACCAGACGG 67073 || ||||| |||||| | || ||||| || ||||| | ||| |||| ||||| ||| Sbjct 544 CCCTGCTGACCAGTAATCTCAACACCGACGCTCTGTGGATTGTACTCCTCAACCAAACGA 603 Query 67074 AATAAGTCATCAAAGTTCTTATCCATAGTTTGACGGCAAGCAATACCATCTACCCAGAAC 67133 || || || || | ||||||| || || || | || ||| || |||||| | Sbjct 604 AACAAATCGTCGATTGAGGTATCCATTGTCTGTCGAGCACAAACACCGTCAACCCAGTGC 663 Query 67134 CAGTCACCGTTAGAACCATATGCCCATACTGATATTACAGAGTAGTCAGATACCTGCTTC 67193 || || || || || |||| |||||||||||| ||| || || || | || ||| Sbjct 664 CAATCCCCATTCGAGTCATACGCCCATACTGATTGTACGGAATAATCCGCAGTTTGTTTC 723 Query 67194 TCACTA-GTAGCAAAGTCAGTAGTGATATAAAAGTTATAA-----CAAGAACGCAGACGT 67247 || | || ||||||||||| ||||| || || |||||| | | |||| Sbjct 724 -GACGACGTGGCAAAGTCAGTGGTGATGTAGAACTTATAATCCTTCTTGTTCGCA----- 777 Query 67248 AATAGCTGTGTACG--GGAATACCATTTAATCTCTGAATCCTGAATCAAACG---CTCAT 67302 | | ||| | || ||| |||| || || ||||||| |||||| ||||| Sbjct 778 AGGATGTGTTTCCGTTGGA--ACCAACCGATGTCACCTTCCTGAACCAAACGAGACTCAT 835 Query 67303 CTTCAGAACTG-ATACGTAACATCAATTCCTGATAGAAGGATGCCAGCTTACC-TGT--C 67358 | || ||| || || | ||| | |||||| ||| || | || ||||| ||| | Sbjct 836 CATC----CTGAATCCGAAGCATAAGCTCCTGACGGAACGACTCAAGTTTACCTTGTTGC 891 Query 67359 TTCAATGCCATCTGGTATTGGTCATTGATGTAGTCATAAGAGAAACGGTCTTCCCAAGCA 67418 || || | | ||| | || || | | ||| || | ||||| ||| ||| || Sbjct 892 TTGAA---GAAGTCGTAATCCTCTTTCAACTGGTCGTAGGTAAAACGTTCTGGCCATGCT 948 Query 67419 CCTT-GAAATTCTTCTCGCGTACAGGGGAATTTCTCGCATACAGGCCATACGTTGACATC 67477 || ||||| ||||| ||| || || | || || || ||||| ||||| || || Sbjct 949 GGTTGGAAATCCTTCTTATCAACA-GGAAACTCCTTACACACTGGCCAAACGTTCACCTC 1007 Query 67478 CCATGCACCAGATTCAACTGCTTCAATAAGAATATCTTCCTTATTAAAGGGAGTACCATT 67537 |||||||||||| || | ||||| | | || || | ||| | |||||||| ||||| Sbjct 1008 CCATGCACCAGACTCGATTGCTTGATACACGATGTCGTTCTTGTCGAAGGGAGTCCCATT 1067 Query 67538 AAAGATTACCTTACGTCTTGT-TGGGTCAAGAGCATGGTTCACGCCCTTATATACTGTGT 67596 ||| || | | ||| | ||||| |||||| |||| | ||||| || || || | Sbjct 1068 -CAGAATAGTCTTTGACTTTTGTGGGTGAAGAGCGTGGTGTAAACCCTTGTAAACAGTAT 1126 Query 67597 CTTTAATAGCTT--CCATTGATGTGCGTGAGCGAGCATCATCATCACTAACTAAGTCATC 67654 | ||||| ||| |||| | || | || ||||| ||||| | |||||||| Sbjct 1127 CGTTAAT--CTTCGCCATCGCAGTTGGAGACTTCGCATCTTCATCTGAGATCAAGTCATC 1184 Query 67655 CAGTAC-GCAA-AGAACGGGACGTTTACCAAAAATCTTAGTACCACGAAGACCTGTCTTA 67712 || || |||| ||| || ||||||||||| ||||| |||||||| | ||| | ||| Sbjct 1185 GAGAACTGCAAGCGAA--GGTCGTTTACCAAAGATCTTCGTACCACGGATACCAGACTTG 1242 Query 67713 GCACCAAACATCTTCACACCAAGACGGTGACCTTCAGCATTTACAAACTCAAGGTAGTTA 67772 ||||| ||||| ||||||| || || | | || ||||| | |||||| Sbjct 1243 GCACCGAACATACGGACACCAA-ACTTATTCCNNCTACGTT---GAACTCCATGTAGTTC 1298 Query 67773 TCCGTG------AAGGTAGCTTTAGGAATCCATTGTTGCAGAAATGGTGAATTGTTGTAT 67826 || ||| | ||||| || ||||| || || ||||| ||| || || Sbjct 1299 TCTGTGATCCGAACCCCAGCTTCTGGCATCCAGTGCTGGAGAAACTCCGAAGAGTCATAA 1358 Query 67827 CGAAACTCAATGTTCTTACGGGCAGACTTAACACCGTTATCCATAGAGTCAGATACATAA 67886 ||| | || || ||| || ||||| ||||| || ||||| ||||| || | ||| Sbjct 1359 CGAGATCGGATCGACTCACGAGCGGACTTCACACCATTGTCCATGGAGTCCGAAATATAC 1418 Query 67887 ATCATTCCCTCTACTTTACCCAAGCTAGGTAGATGCCCAAACACTGCTAAGAACAAAGTA 67946 | ||| | | ||||| || || | || ||||| |||| || | |||| || Sbjct 1419 AACATGCTTTGGACTTTCCCAAAACCGGGAAGATGATTGAACATCGCCAGATACAACGTC 1478 Query 67947 AAGTATTCCATGAACAAAGTTGTCTTTGCTGCGCCACGGAAACATAAGTTAGCAATGTAC 68006 | |||||| | ||||||||| || || || | ||||||||||| | || | ||| | Sbjct 1479 ATGTATTCAAAGAACAAAGTGGTTTTCGCAGAACCACGGAAACACAGATTGGTAAT---C 1535 Query 68007 TGGTTCTTACTG---GTTATCTTATCCAGCATCTTTAAGTGAACAGGAGGGGTTTTGTTT 68063 | ||||| ||| || | || |||| ||| | ||| | | ||| ||||||| Sbjct 1536 CGTTTCTTGCTGTTCGTCACTTTGTCCAACATGGCAAGGTGCATGGAAGGAGTTTTGT-- 1593 Query 68064 GATTCCCCCTCCTTAC---CATTAACCAGCTTAATAAAGTT 68101 ||| || | |||| |||| |||||||| || ||||| Sbjct 1594 -GCTCCTCCCCTTTACCGTCATTCACCAGCTTGATGAAGTT 1633 >seq266624 Length=731 Score = 154 bits (170), Expect = 7e-33 Identities = 319/472 (68%), Gaps = 2/472 (0%) Strand=Plus/Plus Query 55117 TGGGTCTGGTTGAGGTTGCCATGTACGTAAATCATGAGCCAGTTTAGGCATACGTTTCAA 55176 ||| || ||||| ||||| | | ||| | | | ||||| | ||||||||| || | Sbjct 100 TGGATCAGGTTGTGGTTGGTACGAACGAATTTGTTCAGCCAACTCAGGCATACGCTTGAG 159 Query 55177 GTCAGCAATCTCTGCAAGAATATTCAAAGTGATTTGCTGGTCTACGTTTGGACCAATAGT 55236 ||||||||||| | |||| || | | | | || | | ||||||| ||| Sbjct 160 GTCAGCAATCTTACCCAGAACGATCTGACGAAGCATCGGATCCATATCAGGACCAACAGT 219 Query 55237 CTGAAGCATAAAGCCTAAGTCTTGGGACTTTTGGTTGTCTACTTCAGCAGTAGAAATATC 55296 |||||| | | || | || | || || || | || ||| || || || ||||| Sbjct 220 CTGAAGAACCATACCAAGATCATTGGCTTTCTGTTCATCAACTGAGGCTGTGGAGATATC 279 Query 55297 TACTTCAAGGTCAAAGTTACCTTTCAGGTCTTCACGTTTAATAGTGACAAATTCTTCATT 55356 || | |||||||||||||| || || ||| || ||||| ||||| || Sbjct 280 AACCTTCAGGTCAAAGTTACCAGCCAACTCAGAACGAGAGATTTCAACAAACTCTTCGTT 339 Query 55357 GGTAATACGTACTACTTCATGCTCTGCCAAGAACACAGCATTCATAGCAATAATCTTATT 55416 || ||| || ||||| |||||| |||||||| ||||||||| || || ||||| | Sbjct 340 TGTCCCACGAACAACTTCCTGCTCTTCCAAGAACTGAGCATTCATTGCGATGATCTTCTC 399 Query 55417 ACCAAT-TTCAGACATGCCTTTAGCTAAACGACGAAGGATAGCCATCTCACGTTTAGAAG 55475 ||| || ||| | ||| ||||| || | |||||||| || |||||| || ||| | Sbjct 400 ACCGATCTTCTG-CATACCTTTGGCCAGACGACGAACAATGCTCATCTCCCGGACAGATG 458 Query 55476 CAGCATCCAATACACCACGAATACCAGCAGCTACATCACCATAAGACTCACCAGTTACCC 55535 || |||| |||| || ||||||| || || |||||| | ||||||| | | Sbjct 459 TAGAGTCCAGAGCACCCCGGATACCAGTTGCAACGGAACCATACGCATCACCAGAAATAC 518 Query 55536 CACCAGCAAATGCTTTAACACCAGTAAGAGATTCTGCTTCCTGGTTCTGAAG 55587 |||| | |||| ||| || || ||||| | ||||||||| |||||||| || Sbjct 519 CACCGGAGAATGATTTCACCCCGGTAAGTGCTTCTGCTTCTTGGTTCTGGAG 570 >seq76541 Length=11138 Score = 152 bits (168), Expect = 2e-32 Identities = 293/427 (69%), Gaps = 4/427 (1%) Strand=Plus/Minus Query 23579 GATGTATCACAATATTGCCTTTGACGTATATGCACTCATTTACCAGTTATTTATGACAGA 23638 ||| |||||||| || || |||||| |||| || ||||| ||||| |||||| | Sbjct 714 GATCTATCACAACATCTGCTATGACGTTTATGTGCTGATTTATCAGTTGTTTATGGATCA 655 Query 23639 CCTTCTGGATACGGAAGGATTGTTGCATGGCATGAGTATCATGCTAAGAAACTGGGATTG 23698 | | || || || ||| || | | || || || | ||| | |||||||| || Sbjct 654 CATCCTTGACCAAGAGGGAATGCTCGAAGGTCTGGAAGTCCTCCTACGCAACTGGGAATG 595 Query 23699 CACTAAGTTAATTACCTATCTGGCTACTAATTCTTGTGCTGGTAATAAGCTAAGTCTTAA 23758 || || | || || |||||||| || ||||| ||||||||||| || | |||| || Sbjct 594 TACACAGCTCATCACGTATCTGGCCACCAATTCATGTGCTGGTAACGAGTTGGGTCTGAA 535 Query 23759 AGACCAAGCTCAGGAATATGCTGGTAACTATGCTCAGGAAGAAATCAATGACATTAC-CA 23817 | || |||||||| | || || ||||||||| ||||| ||| ||||||| || || Sbjct 534 GGTTCAGGCTCAGGAGTTCGCAGGAAACTATGCTGTTGAAGACATCCATGACATCACGCA 475 Query 23818 GAATCCCATTAGCAGAGTTGTTGGAATACAACTTAGTGGATGGATTGTGTACCTGGTATG 23877 || |||| | || || | |||||||||||| | |||||||| | | ||| ||||||| Sbjct 474 GA-TCCCTCTGCCAAAGCTCTTGGAATACAACCTCGTGGATGGCCTATCTACTTGGTATG 416 Query 23878 TCTATGAAAAGCATTGGGATACTCTAGTTAATGACCAACAGTTAGATGTTTATACAAACA 23937 |||| | || ||| || | || ||| | ||| | | | || | Sbjct 415 TCTACAATAAACATCATTCCACGATGGTCGCAGACGATCAGGAATACATCTACGTTGAGC 356 Query 23938 TCTTTAAACCTGCATGTGA-AGATATTATTCAAATGCAGTTAACTGGGATGCCTATCAAT 23996 | || ||| || ||||| || || |||||||||||||| || || ||||| ||||| Sbjct 355 TGTTCAAAAAGGC-TGTGATCGACATCATTCAAATGCAGTTGACGGGTATGCCCATCAAC 297 Query 23997 ATGAAGA 24003 ||||||| Sbjct 296 ATGAAGA 290 >seq282583 Length=1909 Score = 131 bits (144), Expect = 8e-26 Identities = 524/823 (64%), Gaps = 74/823 (9%) Strand=Plus/Minus Query 24417 GATGGTTGGCATTATCTCTTTGGTAACCTGAACTTAGGTGGAACTGTATC----AGGTCG 24472 ||||| ||||||||| | || |||||| | | | ||||| || |||| |||| | Sbjct 1686 GATGGCTGGCATTATTTGTTCGGTAACTTCAGACTGGGTGGCACGCTATCTGGTAGGTTG 1627 Query 24473 TCTATCCAGTAGCGAACCAAACCTACAGAACCTACC------TTCTGGT--TCC------ 24518 ||| |||| | | || |||||||||||| | || | ||||| ||| Sbjct 1626 TCT-TCCAACAAC---CCCAACCTACAGAACATCCCCGGATCTGCTGGTGCTCCGTTGAA 1571 Query 24519 ---AGGTAT-GCCAAGATAATTAAGAAATGCTTTGAAGCCCCTCCTGGATGGATATTCTG 24574 | || | |||||| | || ||| ||||||||||||| ||||| |||||| ||||||| Sbjct 1570 AAAACGTCTTGCCAAGCTGATCAAGGAATGCTTTGAAGCACCTCCCGGATGGCTATTCTG 1511 Query 24575 TGGGCTAGACTTTGCTTCTCTCGAAGACCGTATATCTGCTTTAACAACCAAAGACCCTAA 24634 ||| || ||||| | || ||||||||| | || || || || | || |||| Sbjct 1510 TGGTCTCGACTTCGACTCACTCGAAGACAGGATCTCAGCACTATCGACACGCGACC---- 1455 Query 24635 TAAACTGAAGGTGTATACCGATGGTTACGATGGGCATAGTCTTCGTGCGTATGCTTACTT 24694 || ||||| || | || || || || |||| || Sbjct 1454 ---------------NNNNNNNNNATATGATGGTCACTGCCTACGAGCTTACTCTTATTT 1410 Query 24695 CGGTGAGATGATGCCTGACATTGAAGATA---CGGTAGAGTCTGTTAATTCTATTCAGGA 24751 || ||| | ||| ||| || || || | || || | || || ||| | | Sbjct 1409 TGGAGAGGTTATGGGTGATATCGACCCTACTTCAGTCGATAGCATCAACTCGATTGCGAA 1350 Query 24752 GAAGTACAA--AGCATATCGTCAGGATTCTAAAGCACCTACCTTTGCTCTTACCTATCAG 24809 ||| ||||| |||| | | || || |||||||| || ||||| || || || |||||| Sbjct 1349 GAAATACAAGCAGCAGA--GACAAGACTCTAAAGCTCCAACCTTCGCACTGACATATCAG 1292 Query 24810 GGCACGTACATCACTTTGATGAAGAACTGTGGTTTCCCTGAACAGAA--AGCTCGAATGG 24867 || || ||||| || ||||||| ||||||||||| | | | ||| |||| | Sbjct 1291 GGAACTTACATGACCCTGATGAACAACTGTGGTTT--CAGCAAGGAATTGGCTCAAGCAA 1234 Query 24868 TTGAGGAACGTTATCATACACTTTATAAG--GTAAGTGAT-------GACTGGGTTCAGG 24918 |||| ||||| |||||| | ||| ||| ||| | ||||||| | | Sbjct 1233 TTGA-GAACG----CATACA----AGAAGATGTACGTGGTCTCGATCAACTGGGTGAATG 1183 Query 24919 CTAAACTAGACCAAGCTGCAAAAGATGGTTATGTAACCGTAGCATTTGGCCTGAGAGTCA 24978 ||| || ||||| | || ||||| || | || || || || || || ||||| | Sbjct 1182 ACCGACTGGAACAAGCCACCAAGGATGGCTACATCACTGTGGCCTTCGGTCTCAGAGTGA 1123 Query 24979 GAACCCCCTTACTTCAACAAGTTATCCGTGGAACCAGTAAAACTCCTTATGAAGCTGAAG 25038 |||| || | || | ||| ||| || ||||||| || || || | || Sbjct 1122 GAACACCTCTTCTGAAGCAAACGGTCCTCAACACGGGTAAAACCCCCAGAGAGGCCGCAG 1063 Query 25039 CTGAAGGACGTACTGCTGGTAATGCATTAGGCCAAAGTTGGTGTCTTCTGAATAACCGTG 25098 | || || | || || ||||| ||| | || || | || | |||| ||||||| Sbjct 1062 CAGAGGGTAGAACAGCAGGTAACGCAATGGGTCAGTCCTATTGCATGTTGAACAACCGTG 1003 Query 25099 CTGGTTCAGAGTTCATGCGTAAGGTGCGGAATAGTAAGCATCGTCTTGATATTCGTCCAA 25158 ||| ||| || |||||| ||||||| || || ||| |||| || || || ||| Sbjct 1002 CTGCTTCTGAATTCATGGGTAAGGTTCGAAAGTCGAAGTATCGACTGGACATCAAACCAT 943 Query 25159 GTACCCATATCCATGATGCTCAGTATTTCCTTATCCGTGATGA 25201 || | || ||||| || ||||| || | |||| ||||||| || Sbjct 942 GTGCTCACATCCACGACGCTCAATACTACCTTGTCCGTGACGA 900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 223575595133264