Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq11950 181 2e-40 seq258668 150 3e-31 seq271769 141 2e-28 seq78081 118 2e-21 seq62469 105 1e-17 seq236343 102 1e-16 >seq11950 Length=2906 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || ||||| ||||| |||||||| ||||| || || | || || ||| Sbjct 869 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGACAGGGTGCGACCGTCCTCT 810 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| ||||| | || || || || ||||| || |||||||||||| Sbjct 809 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGA 750 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| ||| |||||||||| | || ||||| | |||||||| ||| Sbjct 749 ATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACTTCAAGAGTGATGGTCTTT 690 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || ||||||||||| || || |||||| Sbjct 689 CCAGTAAGGGTCTTGACAAAAATTTGCATT 660 Score = 167 bits (184), Expect = 4e-36 Identities = 179/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||||| | ||| || ||||| |||| |||||||| || ||||| || || |||||||| Sbjct 1352 TTTTACTGTCCCCCACGAAGACGCAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTG 1293 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || |||||||| || | ||||| || | ||||| |||||||| || | | || || Sbjct 1292 TAGTCGGAGAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGA 1233 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || ||||| ||||| ||||| || ||||| | |||||| || || ||||| | | Sbjct 1232 TCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGAT 1173 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || || || | || |||||||| || ||||||||||||||||| ||||||||| Sbjct 1172 GGCTCAACCTCAAGAGTAATGGTTTTGCCAGTGAGGGTCTTGACGAAAATCTGCATT 1116 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| | | || | || || ||||| || ||||| ||||| ||||||| Sbjct 433 TTCCTCCACGAAGCCTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGG 374 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | |||||||| | ||||| ||||| || ||||| | ||||| || || | Sbjct 373 AGAGAGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGG 314 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || ||||| || || || ||||| ||||||||| ||| |||||||||| | || | Sbjct 313 GGATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAA 254 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | ||||| ||||| || || || ||||||||||| || |||||| Sbjct 253 CCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 204 Score = 152 bits (168), Expect = 9e-32 Identities = 160/209 (77%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || || ||||| || |||||||| || || || | || || |||| Sbjct 640 CAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAGACAGGGTGCGACCGTCCTCTA 581 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || ||||| ||||| | || || || || ||||| || ||||||||||||| Sbjct 580 GCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAA 521 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||||||| ||| |||||||||| | || || || | ||||| ||||| | Sbjct 520 TCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTTTTGC 461 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || || ||||||||||| || |||||| Sbjct 460 CAGTTAGAGTCTTGACGAAGATTTGCATT 432 Score = 123 bits (136), Expect = 5e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 |||||||||||||| ||||| || || || | || | ||||| || | ||||| || Sbjct 1085 GTGGACTCTTTTTGAATGTTGTAGTCCGACAAGGTTCGGCCATCCTCAAGTTGCTTGCCA 1026 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 ||||| || | | || ||||| || ||||| |||||||||||||||||||| | ||| Sbjct 1025 GCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGAATCTTAGTCTTC 966 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || || |||||||| | || || || || | |||||||| || || || || || Sbjct 965 ACATTTTCAATGGTGTCGGATGGCTCAACCTCAAGAGTGATGGTCTTCCCGGTAAGAGTT 906 Query 68445 TTGACGAATATCTGCATT 68462 || || || ||||||||| Sbjct 905 TTAACAAAGATCTGCATT 888 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| | | || | || || || || || || || || || || |||| Sbjct 205 TTCCACCTCGAAGCCTAAGGACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGG 146 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | |||||||| | || || || || || || || | || ||||| || | Sbjct 145 AAAGAGTACGACCATCTTCCAGTTGTTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGG 86 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || |||||||||||||| ||||| |||||||| ||| || || || | || || | Sbjct 85 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATCGTATCAGATGGCTCGA 26 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 | || | |||||||| ||||| || Sbjct 25 CCTCGAGAGTGATGGTCTTTCCAGT 1 >seq258668 Length=654 Score = 150 bits (166), Expect = 3e-31 Identities = 312/459 (68%), Gaps = 8/459 (2%) Strand=Plus/Minus Query 268283 GCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCG 268342 || || |||||||||||| ||||| ||||| || | | ||| ||| ||| | || Sbjct 647 GCGTGCCCCCAATCGCGCAGCGCGTCGATGTTGCCCATGTACAAACATGTCTCCAACCC- 589 Query 268343 AGCTTCACGCG--TGCA-AGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGT 268399 || | || | || | || || ||||| || |||||||| |||||||| || || Sbjct 588 --CTGCGCGATATTACACATCCCACGGGTGATCTTGCGGGTCACAAACGTCTCACCGCGG 531 Query 268400 AGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGG 268459 | ||||| |||||||| || | ||||||||||||||| |||||||||| ||||| ||| Sbjct 530 CGCGGGCTTTCGTGGTTAAACAAGATGCCGTTGCACGCATACATGCCATAGGCCTCGCGG 471 Query 268460 TAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGG 268519 || ||||| | |||| | || ||||||| || || || || || || |||||| Sbjct 470 TAATTCACCGTCATCCAAAACGCGTACATCTTAGCCACCGCATAGGGGCTGCGCGGATGG 411 Query 268520 AAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGAT 268579 || ||||| || | || || | || || || ||| | | || || || || Sbjct 410 AACGGCGTGGTCTCGGTCTGGGGCGTCTCACGCACCAAGCCGTACAATTCAGATGTAGAC 351 Query 268580 GCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAG-ATTCGGATTGCCTCGAGCAAACG 268638 || || || ||| | | ||||| || || ||| | || || ||||| | || || Sbjct 350 GCCTGATAAAACCGGGACTTGTTTTCAAGGCC-CAGAAACCGAATGGCCTCCAACAGCCG 292 Query 268639 AAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGAC 268698 || |||||| | | || || || || ||||| || ||| || || ||| || Sbjct 291 CAGCGTTCCCGTTGCGTCGACATCTGCCGTATATTCGGGCGCTTCAAAACTTACCGCAAC 232 Query 268699 ATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTT 268737 |||||| || || || || ||||| ||||| || ||||| Sbjct 231 ATGGCTTTGCGCACCAAGATTATAGACCTCGTCAGGTTT 193 >seq271769 Length=1390 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| |||| ||||| || | |||||| || ||||| || Sbjct 848 TTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGATC 789 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | || || || || ||||| |||||||| || || ||||| | ||| ||| |||| Sbjct 788 AAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTCTCG 729 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||||| || | | || || || | ||||||||| || |||||||||||||||||||| Sbjct 728 ATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 669 Query 68454 ATCTGCAT 68461 || ||||| Sbjct 668 ATTTGCAT 661 >seq78081 Length=4256 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||| ||||| || || || || || | ||||| || | |||||| ||||| || | Sbjct 2975 CTTTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGA 3034 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | | | ||||| || || || || || ||||| ||||| || || | ||| || | Sbjct 3035 TCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTT 3094 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 ||||||| || | | || || || | ||| |||||||| |||||||||||||| |||| Sbjct 3095 CGATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGA 3154 Query 68452 ATATCTGCAT 68461 | |||||||| Sbjct 3155 AAATCTGCAT 3164 >seq62469 Length=843 Score = 105 bits (116), Expect = 1e-17 Identities = 209/307 (68%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 268447 ATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGG 268506 ||| || || ||||| || || |||| |||||| | | ||||||||| || || || Sbjct 811 ATAAGCTTCGCGGTAATTTACCGTAATCCAATATGCATAAAGCTTTGCAACAGCATAAGG 752 Query 268507 AGAACGTGGATGGAAGGGCGTCGTGATCTTT-TGAGGGATTTCTCGGACTTTGCCAAAGA 268565 ||||||| || || | || ||| || || |||||| | || ||| | | Sbjct 751 GCTGCGTGGATAAAATGGTTTTGTT-TCTCGCTGGGGAATTTCTTGAACAAGGCCGTATA 693 Query 268566 GCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTG 268625 | || || ||||| |||||||| | |||||| ||| | ||||| ||||||| || | Sbjct 692 GTTCAGACGTCGAAGCTTGGTAATATTTTGTTTTTTCACCAAGACCTAAGATTCGAATAG 633 Query 268626 CCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGA 268685 | || | | ||| | | |||| |||| || ||||||||||| ||| ||| | Sbjct 632 CTTCCAAAATACGCAATGCCCCCAAAGCATCAGAGTTTGCTGTATACTCTGGCTCCTCAA 573 Query 268686 ATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCT 268745 | ||||| |||||||| || || | ||||||||||| ||||| |||| || | | Sbjct 572 AGGACACAGCAACATGGCTTTGCGCTGCAAGGTTATAAACTTCATCTGGTTGCACTTTTT 513 Query 268746 GCACGAT 268752 ||| ||| Sbjct 512 GCAGGAT 506 >seq236343 Length=1092 Score = 102 bits (112), Expect = 1e-16 Identities = 167/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 268361 CCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAG 268420 |||||||| | ||| || || || ||||| || || | | ||| |||||| || || Sbjct 283 CCGCGAGTAACTTTACGCGTTACAAACGTTTCCCCTCTTCTAGGAGACTCGTGATTAAAT 224 Query 268421 AGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTAT 268480 | || || || || || || | ||||| | ||||| || || || |||| || Sbjct 223 AAAATTCCATTACAGGCAAATAAACCATAGGATTCACGATAATTTACCGTAATCCAATAC 164 Query 268481 GCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGA 268540 || | | || ||||||||||| ||||| ||||||| || ||||| | ||||| Sbjct 163 GCGTATAGTTTCGCAACTGCGTAAGGAGAGCGTGGATAAAAAGGCGTATTTTCATTTTGT 104 Query 268541 GGGATT-TCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTT 268597 ||||| ||| | ||||| ||| | ||||||||||| | |||||| || || |||||| Sbjct 103 GGGATCGTCT-GCACTTTCCCATAAAGCTCGGAGGTTGCTGCTTGATAAAATTTTGTT 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918297462867520